Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq52 100 9e-18 seq41 100 9e-18 seq78 98.7 3e-17 seq64 98.7 3e-17 seq47 98.7 3e-17 >seq52 Length=57331580 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | Sbjct 34731351 GCTGAAGTAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGATCAATC 34731292 Query 2829 CCGGGCTT 2836 | |||||| Sbjct 34731291 CTGGGCTT 34731284 >seq41 Length=66926849 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||||||||||||| |||||||||||| |||||||||||||| |||| ||||| Sbjct 44639803 AAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGAGCTAAAGGTCCCTGGATCAATCCCGG 44639862 Query 2833 GCTTCAGC 2840 ||||| || Sbjct 44639863 GCTTCGGC 44639870 >seq78 Length=264820526 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 120723944 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 120723885 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 120723884 CCGGGTTTCGGC 120723873 >seq64 Length=15301441 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 12855679 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 12855620 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 12855619 CCGGGTTTCGGC 12855608 >seq47 Length=35171843 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 26671046 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 26671105 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 26671106 CCGGGTTTCGGC 26671117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849585958245