Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq68 176 6e-38 seq50 163 4e-34 seq54 113 6e-19 seq74 102 1e-15 >seq68 Length=189227759 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || |||| ||||| Sbjct 52770628 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 52770681 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 52770682 GGCATCATGAACTCTTTCGTCAACGACATTTTCGAGCGCATCGCCGGCGAGGCCTCCCGC 52770741 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | | ||||||||||| ||||||||| Sbjct 52770742 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCAGGGAGATCCAGACTGCCGTGCGC 52770801 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 52770802 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 52770850 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || |||| ||||| Sbjct 52809026 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 52809079 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| | || ||||||| | ||||||| ||| Sbjct 52809080 GGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCCGGCGAGGCCTCCCGC 52809139 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 52809140 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACTGCCGTGCGC 52809199 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 52809200 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 52809248 Score = 163 bits (180), Expect = 4e-34 Identities = 173/227 (76%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || ||| ||||| Sbjct 52787276 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCATCTAAGGCCATG 52787223 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| ||||||| || Sbjct 52787222 GGCATCATGAACTCTTTCGTCAACGACATTTTCGAGCGCATCGCTGGCGAGGCCTCCCGT 52787163 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 52787162 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACTGCCGTGCGC 52787103 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || ||||||| ||||||||| ||||||||||| Sbjct 52787102 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 52787056 Score = 127 bits (140), Expect = 3e-23 Identities = 147/197 (75%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || |||| ||||| Sbjct 52746875 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 52746822 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| | || ||||||| | |||||| ||| Sbjct 52746821 GGCATCATGAACTCTTTCGTCAACGACATCTTTGAGCGCATCGCCGGCGAGGCATCCCGC 52746762 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 52746761 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACTGCCGTGCGC 52746702 Query 725094 CTGATCATGCGCGGCGA 725110 ||| | ||| ||| || Sbjct 52746701 CTGCTGCTGCCCGGGGA 52746685 Score = 113 bits (124), Expect = 6e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 725021 CGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCA 725080 ||||||| |||||||||| || |||||||||| || ||| | || |||||||| Sbjct 52741678 CGAGGCCTCCCGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCA 52741619 Query 725081 GACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| |||||||||||| | ||| ||| || ||||||| ||||||||| ||||||||||| Sbjct 52741618 GACTGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 52741559 Query 725141 CA 725142 || Sbjct 52741558 CA 52741557 >seq50 Length=71552732 Score = 163 bits (180), Expect = 4e-34 Identities = 143/178 (80%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| ||||||||||| || || |||||| || |||| ||||| | || |||| Sbjct 128034 AAGGCCATGAGCATCATGAACTCCTTCGTGAACGACGTGTTCGAGCGCATTGCCAGCGAG 128093 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || | |||||||||| | ||||||||||| ||| ||| || || ||| | ||||| Sbjct 128094 GCGGCGCGCCTGGCGCAGTACAACAAGCGCACCACCATCACCAGCCGTGAGGTGCAGACG 128153 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||||||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 128154 GCCGTGCGCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 128211 >seq54 Length=44825207 Score = 113 bits (124), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || ||| |||| ||| ||| |||| ||||| Sbjct 10350499 TACAAGGTGCTGAAGCAGGTTCATCCCGACACCGGA-----ATC-TCCTCCAAGGCCATG 10350552 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||| ||||| | || ||||| | |||||| ||| Sbjct 10350553 GGCATCATGAACTCCTTTGTCAATGACATTTTTGAGCGCATTGCTGGGGAGGCCTCTCGT 10350612 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || || || ||||| |||||||| Sbjct 10350613 CTGGCGCATTACAACAAGCGCTCAACCATCACTTCCCGGGAAATTCAGACAGCCGTGCGT 10350672 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| ||| || || || || ||||||| Sbjct 10350673 CTACTGCTGCCAGGGGAGCTGGCCAAGCATGCTGTATCTGAAGGCACCA 10350721 >seq74 Length=41239083 Score = 102 bits (112), Expect = 1e-15 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||||||||||| || |||||| |||||| ||| | ||||| | | ||||| Sbjct 8036070 CGAGCCGCTGCTGCGGGAGAACCCGCGCCGCTTCGTCATCTTCCCGGTGCAGTACCACGA 8036129 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||| | |||||| || ||||| ||||||||||| ||||||||||||||||| || | Sbjct 8036130 CGTATGGCAGATGTAC-AAGAAGGCTGAGGCCTCCTTCTGGACCGCCGAGGAGGT-GAGC 8036187 Query 1455835 TCGGC 1455839 |||| Sbjct 8036188 ACGGC 8036192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177803387401122