Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq38 138 2e-27 seq74 129 8e-25 >seq38 Length=209695328 Score = 138 bits (152), Expect = 2e-27 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 39631 ATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACC 39690 ||||| |||||||||| ||||| | || || || || || ||||||||||| || || Sbjct 163297290 ATGTATTACCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCC 163297349 Query 39691 ACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGC 39750 | ||| || |||||||||||||||||||||||||| || |||||||| ||||| ||||| Sbjct 163297350 TCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGC 163297409 Query 39751 TGCAAATGCAACAAGTCTCTCTCC 39774 ||||| ||||| | |||||| || Sbjct 163297410 AGCAAAGGCAACCACTCTCTCCCC 163297433 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 |||||||| || |||||||| || || ||||||||||||| |||||| ||||||||| Sbjct 163307566 TTTTCATTTACAATTCCATCGCTGGCTGCAAAAAATGCCAGGACATGTGATATAAAATAT 163307625 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTAC 40116 ||||| || | | |||| || ||||||| | | || ||||||| ||| || Sbjct 163307626 TTTTCTTCTGATTTCAACTTGTTCCAGTGAGGAAGGTCCTTTGATAAATCAAC 163307678 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGA 40174 || ||||| ||||||||||| || || | ||||| ||||||||| |||||||||||| | Sbjct 163314032 ACCTCTTCTGCTGTCCAAAAGGATGCTTGTGCCTGTTTGTACATTTTCCATATATCAGGG 163314091 Query 40175 TATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATGGGTTC 40227 || || || || || || ||||||| | || |||||| ||| | ||| || Sbjct 163314092 TACTGGATAGGGAAGATGACAAATCGACGAGGGTTTTTTCGAAGAAGGGGCTC 163314144 >seq74 Length=41239083 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | || |||||||| |||||||||||||||| || | || | Sbjct 8041925 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 8041866 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | |||||| |||| |||||||| |||||||||||||| ||||||||||||||||| | Sbjct 8041865 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 8041806 Query 39759 CAAC 39762 | || Sbjct 8041805 CTAC 8041802 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||| | || || ||||| | |||||| |||||||||||||| |||||||| || || Sbjct 8038873 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 8038814 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || |||||||| | ||||| ||||| || || ||| Sbjct 8038813 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTAATCTGCACTTCT 8038768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908104504840