Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq74 118 8e-22 seq38 105 5e-18 seq46 86.0 5e-12 >seq74 Length=41239083 Score = 118 bits (130), Expect = 8e-22 Identities = 93/109 (85%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 |||||||| || ||||| |||||| || ||||||||||| || || |||||||| ||||| Sbjct 8038766 CAAGAAGTGCAGATTAC-AGAAGCTCGCTGTTTTTATGGCTTCCAGATTGCCATGGAAAA 8038824 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||||| |||||||||||||| || ||||| || ||||| |||||| Sbjct 8038825 CATTCATTCAGAAATGTACAGTCTGCTTATAGACACTTACATAAAAGAT 8038873 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||| |||||||| || || || | |||||||| |||||||| ||||| || Sbjct 8043175 AATCCATTTGACTTTATGGAGAACATCTCACTTGAAGGCAAGACAAACTTCTTTGAGAAG 8043234 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | || |||||||||||| | ||||| |||||| Sbjct 8043235 AGAGTAGGAGAATATCAGAGGATGGGAGTCATG 8043267 >seq38 Length=209695328 Score = 105 bits (116), Expect = 5e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 41046 TTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTG 41105 |||||||| || || ||||| ||| | || || || || ||| ||||| || || Sbjct 98350588 TTGATGGCTTTACCCCCTTGCCATGCTCTCTGCCAATTCTATGTTGTAAATGGCGAGCTT 98350529 Query 41106 TCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCG 41165 || || || ||||||| ||||| || || ||||||||||| || || || || || || Sbjct 98350528 TCTTGCCAGCTGTATCAGAGATCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCC 98350469 Query 41166 AGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 |||||| | ||||||||||| |||||||| || || || Sbjct 98350468 AGTTATTCACTGCTCACGTACATGATTGCTCATGTGAC 98350431 Score = 100 bits (110), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||| || | || || ||||| | |||||||| || ||||| |||||||| ||||| Sbjct 163297431 GGAGA--GAGTGGTTGCCTTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGATCTTTTGCT 163297374 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||||||| | ||||| |||| |||||||||| |||| || || |||||| | Sbjct 163297373 GCCATATTTTGGCTGAAGAAGAGAGGCCTGATGCCTGGACTGACTTTCTCCAATGAGCTC 163297314 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 163297313 ATTAGCAGAGATGA 163297300 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| || | |||||||| || ||||| ||||| ||||| ||| ||| |||||| Sbjct 163306331 CAGGAAGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGTTTTCAGATTCTCATTGAAAAT 163306272 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||| || || ||||||||||| || ||||| || |||||||||||| Sbjct 163306271 GTTCACTCAGAGATGTACAGTCTGCTAATAGACACTTACATCAAAGAT 163306224 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 ||||||| |||||||| |||||||||||||| | ||||| || || ||||| ||||| | Sbjct 163281607 AAAACCCTTTTGATTTCATGGAAAATATTTCACTAGAAGGAAAGACCAACTTCTTTGAGA 163281548 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATA---ACAAGTGACAATAAATTTA 44609 | || ||| ||| |||||||| | | || ||| | |||| |||||| || | Sbjct 163281547 AGCGAGTTTCAGAGTATCAGCGCTTCGCTGTAATGGCAGAGACAACAGACAATGTGTTCA 163281488 Query 44610 CTACGGATGAAGATTTCTAAT 44630 || ||||| |||||| |||| Sbjct 163281487 CTTTGGATGCAGATTTTTAAT 163281467 >seq46 Length=49293797 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 47225 tttttAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGA 47284 |||| |||| | || | ||||| || ||| || ||||||| || || ||||||||||| Sbjct 11869927 TTTTCAGGATTGTACAAGAAATCGGGTAAACTAGTATTTCTTGGCTTGGACAATGCAGGG 11869986 Query 47285 AAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACATTA 47344 ||||| ||||||| |||||||| ||| | | | || | ||||| ||||||| || Sbjct 11869987 AAAACCACATTACTGCACATGCTTAAAGATGACAGATTGGGACAGCATGTCCCTACACTA 11870046 Query 47345 CATCC 47349 ||||| Sbjct 11870047 CATCC 11870051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455607636405