Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq26 208 2e-48 seq58 147 7e-30 seq57 114 4e-20 seq74 84.2 7e-11 >seq26 Length=15469835 Score = 208 bits (230), Expect = 2e-48 Identities = 377/544 (69%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 349765 AAATATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 |||| || | || ||||| | |||||||| || || ||||| || | || || | || Sbjct 10584849 AAATGTTTTGATCTTTGACCTGGGTGGTGGCACCTTCGATGTGTCTATTCTCACCATCGA 10584908 Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTT 349884 ||| || || |||||||| || | ||||| |||||||| || || ||||||||||| || Sbjct 10584909 AGATGGTATCTTTGAAGTGAAGTCCACTGCAGGTGATACCCACCTGGGTGGAGAAGACTT 10584968 Query 349885 TGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATA 349943 |||||| | | || || || || ||||| ||||| ||||| || | || | Sbjct 10584969 TGATAACAGAATGGTCAACCACTTCATTGCTGAATTCAAGCG-CAAGCACAAGAAAGACA 10585027 Query 349944 TTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTT 350003 | | || || |||||| | || || || | || || ||||||||||| |||||| Sbjct 10585028 TCAGTGAAAACAAGAGAGCAGTTCGCCGTCTCCGCACAGCATGTGAACGTGCAAAGCGTA 10585087 Query 350004 CCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATT 350063 || | || || | || || || |||||| ||||||||||| ||| |||| || | Sbjct 10585088 CCCTCTCCTCCAGCACACAGGCCAGTATTGAGATTGATTCTCTCTATGAGGGCATTGACT 10585147 Query 350064 TCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGC 350121 ||| | || || || || ||||| |||||||| | || ||| ||||| || | | Sbjct 10585148 TCTACACCTCAATCACCCGAGCTCGCTTTGAAGAGT--TGAATGCTGATCTGTTCCGTGG 10585205 Query 350122 AACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGA 350181 || |||| |||||||| || | || ||||| || || |||| ||||| | Sbjct 10585206 TACTCTGGACCCTGTGGAGAAGGCCTTGCGGGATGCCAAGCTGGACAAATCCCAGATCCA 10585265 Query 350182 TGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGA 350241 ||| |||| || |||||||| || || || || ||||| |||| | | ||| || Sbjct 10585266 TGACATAGTATTGGTTGGTGGGTCCACTCGCATCCCAAAGATTCAGAAACTCCTACAAGA 10585325 Query 350242 GTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATG 350300 || || ||||||||||| | | ||| | || ||||| ||||||||||| || |||| Sbjct 10585326 CTTCTTCAATGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAAGCTGTAGCTTATG 10585384 Query 350301 GTGC 350304 |||| Sbjct 10585385 GTGC 10585388 Score = 159 bits (176), Expect = 1e-33 Identities = 357/531 (67%), Gaps = 4/531 (1%) Strand=Plus/Minus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAAT-TCTTTGCCATTA 183320 |||||||||| || ||||||||||| || || || | | | | | ||||||||||| Sbjct 10585390 CTGCACCATAAGCTACAGCTTCATCAGGATTGAT-GCTCTTGTTCAGCTCTTTGCCATTG 10585332 Query 183321 AAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACT 183380 || || ||| || | || ||||| ||||| || | ||| || ||||| || |||||| Sbjct 10585331 AAGAAGTCTTGTAGGAGTTTCTGAATCTTTGGGATGCGAGTGGACCCACCAACCAATACT 10585272 Query 183381 ACTTCATCGATATTACTTTTA-CTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTC 183439 | |||| ||| | ||| | | ||| | ||| || | || || |||||||| Sbjct 10585271 ATGTCATGGATCTGGGATTTGTCCAGCTTG-GCATCCCGCAAGGCCTTCTCCACAGGGTC 10585213 Query 183440 CATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGa 183499 || ||| | || | ||| | |||||||| || | |||| || | || | Sbjct 10585212 CAGAGTACCACGGAACAGATCAGCATTCAACTCTTCAAAGCGAGCTCGGGTGATTGAGGT 10585153 Query 183500 aaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATGA 183559 | |||||||| || | ||| | |||||||| ||||| | ||||| || || Sbjct 10585152 GTAGAAGTCAATGCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGTGTGCTGGAGGA 10585093 Query 183560 TAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATC 183619 | || | || || |||||||||||||| | || || || | || ||| || || Sbjct 10585092 GAGGGTACGCTTTGCACGTTCACATGCTGTGCGGAGACGGCGAACTGCTCTCTTGTTTTC 10585033 Query 183620 TGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGT 183679 | || |||| || || || | || ||||||| ||| || || | | | ||| | Sbjct 10585032 ACTGATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATTCTGTT 10584973 Query 183680 ATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCC 183739 |||||| ||||| ||||| | || ||||| || ||||| | || |||||||| || || Sbjct 10584972 ATCAAAGTCTTCTCCACCCAGGTGGGTATCACCTGCAGTGGACTTCACTTCAAAGATACC 10584913 Query 183740 GTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 ||||| || | | ||| || ||||| || || |||||||||| ||||| Sbjct 10584912 ATCTTCGATGGTGAGAATAGACACATCGAAGGTGCCACCACCCAGGTCAAA 10584862 Score = 105 bits (116), Expect = 2e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| ||||||| | |||||||||||||| || ||||| ||||||| || Sbjct 10584555 ACTGTTACTAATGCTGTGGTCACTGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCC 10584614 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | ||||| || | || || || |||| || |||||||| || Sbjct 10584615 ACAAAAGATGCTGGTACTATTGCAGGTCTCAACGTACTCCGAATCATCAATGAACCAACA 10584674 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 ||||| || ||||| ||||| | || |||| Sbjct 10584675 GCTGCTGCTATTGCTTATGGCTTAGACAAAA 10584705 Score = 87.8 bits (96), Expect = 5e-12 Identities = 147/207 (71%), Gaps = 7/207 (3%) Strand=Plus/Plus Query 349383 TTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAA-TCTACACAATCTGAT 349441 |||| ||||| ||||| || |||||| | || || ||| || | || |||||| Sbjct 10584217 TTTTAGATGCAAAGCGGCTGATTGGTCGCAGATTCGATGATTCTGTCGTC-CAGTCTGAT 10584275 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || |||| ||||| ||||| || || || | || | |||| || |||| Sbjct 10584276 ATGAAGCATTGGCCTTTCACTGTGGTG---AATGATGCTGGCAGGCCAAAAGTTCAGGTG 10584332 Query 349502 GAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTTAGT 349560 || |||||||| || | || | |||||||| |||||||||||||| |||||||| Sbjct 10584333 GAGTATAAAGGCGAG-ACCAAGAGCTTTTACCCAGAAGAAATTTCATCCATGGTTTTGAC 10584391 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATA 349587 ||| |||||||| ||||| ||||| || Sbjct 10584392 TAAGATGAAGGAGATTGCAGAAGCCTA 10584418 >seq58 Length=12078735 Score = 147 bits (162), Expect = 7e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| | | | || || || || || || || || || || || || || || Sbjct 9617667 CATACCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 9617726 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || || ||||||||||| || | ||||| ||||| Sbjct 9617727 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 9617786 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| |||||||| ||||| || ||||| || ||||| ||||| | ||| || || Sbjct 9617787 GGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTC 9617846 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||| || || | |||||| || || || || || ||||| |||||||| Sbjct 9617847 AACTTCCAGGGTGATTGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617897 Score = 143 bits (158), Expect = 8e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| || || || || || || || ||||| | || || |||||| Sbjct 9617002 AGCACCAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 9617061 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| ||||| ||||| |||||||| ||| Sbjct 9617062 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 9617121 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| ||||| || ||||| ||||| | ||| || ||||| || || || | ||| Sbjct 9617122 TGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 9617181 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 9617182 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617213 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| | | | || || || || || || || || || || || || || || Sbjct 9617211 CATACCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 9617270 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || || ||||||||||| || | ||||| ||||| Sbjct 9617271 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 9617330 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| |||||||| |||||||| ||||| || ||||| ||||| | ||| || || Sbjct 9617331 GGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTC 9617390 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || || || || ||||| |||||||| Sbjct 9617391 AACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617441 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| | | | || || || || || || || || || || || || || || Sbjct 9617439 CATACCACCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 9617498 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || || ||||||||||| || | ||||| ||||| Sbjct 9617499 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 9617558 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| |||||||| |||||||| ||||| || ||||| ||||| | ||| || || Sbjct 9617559 GGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTC 9617618 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || || || || ||||| |||||||| Sbjct 9617619 AACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617669 >seq57 Length=27084703 Score = 114 bits (126), Expect = 4e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 ||||||||||||| |||||||| || ||||| |||||||| ||||| |||||| | Sbjct 25551390 CAGCTTGAACAGCAGCACCATAGGCTACAGCCTCATCTGGATTAATGCCACGAGAAGGCT 25551449 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 |||||||| | || || || | || || || ||||| || ||||| || || |||| Sbjct 25551450 CTTTGCCACTGAAGAACTCCTTCACCAGCTGCTGTATTTTGGGGATTCTTGTGGAGCCAC 25551509 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | |||| |||||| |||| | ||| | | | ||||||| || ||||| | Sbjct 25551510 CAACAAGGACTATTTCATCAATATCAGATTTCTTCAGATCAGAATCTTCTAGCACTTTCT 25551569 Query 183430 CAACAGGGTCCATAGT 183445 |||||| | |||||| Sbjct 25551570 GAACAGGCTTCATAGT 25551585 Score = 107 bits (118), Expect = 6e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 350123 ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGAT 350182 || ||| | ||||| | ||||| || ||||| | | || ||| | | |||||| Sbjct 25551585 ACTATGAAGCCTGTTCAGAAAGTGCTAGAAGATTCTGATCTGAAGAAATCTGATATTGAT 25551526 Query 350183 GAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAG 350242 ||| |||| | |||||||| || ||| | || || ||| | || ||| | | ||| Sbjct 25551525 GAAATAGTCCTTGTTGGTGGCTCCACAAGAATCCCCAAAATACAGCAGCTGGTGAAGGAG 25551466 Query 350243 TTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGT 350302 || || | ||||||||| |||||| | |||||||||||||| ||||| || |||||| Sbjct 25551465 TTCTTCAGTGGCAAAGAGCCTTCTCGTGGCATTAATCCAGATGAGGCTGTAGCCTATGGT 25551406 Query 350303 GCTGCTGTTCAGGC 350316 ||||||||||| || Sbjct 25551405 GCTGCTGTTCAAGC 25551392 >seq74 Length=41239083 Score = 84.2 bits (92), Expect = 7e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 223722 CCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCTTTT 223781 |||||||||| || | ||||| ||||| || | |||||||||||| ||||| || | Sbjct 8041925 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 8041866 Query 223782 TCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAAACG 223841 ||| |||||| || | ||||| || ||||| || || |||||||| ||||| | Sbjct 8041865 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAG 8041806 Query 223842 CTACTA 223847 |||||| Sbjct 8041805 CTACTA 8041800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252827450043