Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq19 109 6e-19 seq52 82.4 8e-11 >seq19 Length=7868696 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | ||| || ||||| ||||| || |||||||| Sbjct 4154628 GTGAAGATGTATCGAGGGCTGGCAGAATCTTTCCCACCATGCAGCCTGGTACCAAACTGA 4154569 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || ||||||||||| || |||||| ||||||||||||||||| | | Sbjct 4154568 CCAAGGGGCTGCAGCAGGTTGAGGTTATTACTGCCCACAAAATTCTGAGCCAAATTAATA 4154509 Query 152149 ATCGT 152153 || || Sbjct 4154508 ATGGT 4154504 >seq52 Length=57331580 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||| | ||| |||||||||||||||||| ||| | ||||| || || Sbjct 5204177 GTGAAAATATAACGGGGGCTAGCAGCATCCTTGCCACCATGAAGCCTGGTACCAAACTGG 5204236 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | || || || | ||||| || |||||||| || |||||||| || Sbjct 5204237 CCAATGGGTTGCAGAAGATTAACATTGTTACTTCCAACAAAGTTCTGGGCCAAGTTAACT 5204296 Query 117425 ATCGT 117429 || || Sbjct 5204297 ATTGT 5204301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215445943800