Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq38 107 2e-18 seq73 104 3e-17 seq60 87.8 2e-12 >seq38 Length=209695328 Score = 107 bits (118), Expect = 2e-18 Identities = 178/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 32850 ATAAATTCTTTTATACATGTTATA--ATGTATAGTTATTACGGATTAACAGCAATAGGTC 32907 |||||| | ||||| |||||| | ||||| | || || |||||| | | || | Sbjct 157209663 ATAAATGCATTTATTCATGTTTTGTTATGTACATGTACTATGGATTAGCTGTCTGTGGCC 157209604 Query 32908 CTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTAACTATCATACAATTGATGCAGT 32967 || | | || || || ||||||||| ||| || || | | |||||| | |||| Sbjct 157209603 CTAAAGTTCAGAAGTACCTCTGGTGGAAATGATAATTGACCAAACTGCAATTGGTTCAGT 157209544 Query 32968 TTCATTTAGCAATAGGTCATACAGCAATGTCTATATATATAGATTGTCCGTTCCCTAGAT 33027 | || | | | || |||||||| |||||| |||| |||||||| || || |||| Sbjct 157209543 TCCACGTGACTCTTGGCCATACAGCCTGGTCTATTTATAATGATTGTCCCTTTCCCAGAT 157209484 Query 33028 GGATACAGTGGGCTGTTATTATATATTCTATCACCTTTATCATCCTTTTTGGCAACTTTT 33087 |||| | |||| ||| ||| | ||| || | ||||||||| || | ||||||||||| | Sbjct 157209483 GGATGTACTGGGGTGTAATTTTCTATGCTGTTACCTTTATCCTCTTGTTTGGCAACTTCT 157209424 Query 33088 ATCTCAGGACATATAA 33103 | |||||||||| Sbjct 157209423 ACTATTGGACATATAA 157209408 >seq73 Length=52630461 Score = 104 bits (114), Expect = 3e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 32964 CAGTTTCATTTAGCAATAGGTCATACAGCAATGTCTATATATATAGATTGTCCGTTCCCT 33023 ||||| ||| | | | || |||||||| |||||| ||||| |||||||| || || Sbjct 10814199 CAGTTCCATGTGACTCTTGGCCATACAGCCTGGTCTATTTATATTGATTGTCCCTTTCCC 10814258 Query 33024 AGATGGATACAGTGGGCTGTTATTATATATTCTATCACCTTTATCATCCTTTTTGGCAAC 33083 | |||||| || |||| ||| ||| | ||| || |||||||||| |||| ||||||||| Sbjct 10814259 AAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTTATTCTCCTGTTTGGCAAC 10814318 Query 33084 TTTTA-TCTCAGGACATATAA 33103 || || | || |||||||||| Sbjct 10814319 TTCTACTATC-GGACATATAA 10814338 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 32670 GCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATA 32729 || || |||| || | | |||| ||||| || ||||| | || || | || ||||| Sbjct 10810013 GCTTTATGGTGGTACTATGTCTCCAAAGGAATTGAATACTTGGACACAGTATTTTTCATC 10810072 Query 32730 ATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTT 32789 || | ||||||||||||||| | || || | || || || || |||| |||||||| Sbjct 10810073 CTGCGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTTTATCATCATTACACCATGTTC 10810132 Query 32790 ACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || || | ||||| || || || ||| ||||||||||||| Sbjct 10810133 ACCTTGTGGTGGATTGGAATCAAGTGGGTTGCAGGAGGACA 10810173 >seq60 Length=24207467 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 50971 ATTGGCTATAACTACCTGATGGTGATATTTACTTAACGCGTTCTTGGCTCTATCTATTAG 51030 ||| || || || |||||||| |||| || ||| || ||| | | |||| |||| Sbjct 23096268 ATTTGCGATCACCACCTGATGCCGATACTTCTCTAAAGCCTTCAGTGATTTATCAATTAA 23096209 Query 51031 TATTTCTTCATTTGTTTCTAGTTTAAAGGAAACAACAAATGCTTTTGGGGCCCATTCGTT 51090 || ||| || |||||| | ||||||||||| |||||| |||| ||||||||||| || Sbjct 23096208 GATGTCTGGATCTGTTTCCAATTTAAAGGAAATAACAAAAGCTTCAGGGGCCCATTCTTT 23096149 Query 51091 AACTAAATGGGCCATCATTTTAGGAACGGCCTTCAT 51126 |||| | | || |||||| || || |||||| Sbjct 23096148 GACTAGTGGAGACAGCATTTTTGGCACCATCTTCAT 23096113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603180189279440