Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq42 286 5e-72 >seq42 Length=54617404 Score = 286 bits (316), Expect = 5e-72 Identities = 684/1007 (68%), Gaps = 37/1007 (4%) Strand=Plus/Plus Query 13608 GACTACGTGAACATGACGGCCGACTGCGTGGCCTTC-GTGAAAGACAGGGGGTATCTCGT 13666 |||||| ||||| ||||||| ||||||| | || | | | | | || | | || Sbjct 40096031 GACTACCTGAACCTGACGGCGGACTGCGCGCGCTACCGCGCCCGGC-GGCGCTTCCTGCA 40096089 Query 13667 GAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCA 13726 | | | |||||| ||| |||| | || || |||||| ||| || || |||||| | Sbjct 40096090 GGTGGCGCTGAGCGAGGAGGAGGCGGCCTTCCCGCTCGCCTTCTCCATGGTCATCCACGA 40096149 Query 13727 CAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTG 13786 | || | ||| ||||||||||||||||| | ||| | ||||| ||||||||| | ||||| Sbjct 40096150 CCAGCTGGAGCTGTTCGAGCGCCTCCTGCGCGCCCTGTACGCGCCGCAGAACGTGTACTG 40096209 Query 13787 CGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAG 13846 || ||||||||| ||||| | || ||||||| | | || ||| |||| | ||| Sbjct 40096210 TGTGCACGTGGACGCCAAGGCGCCCGCCGAGTTCCTGCAGGCCGTGCGGGCCCTGGCCGC 40096269 Query 13847 GTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAG 13906 |||||||| ||||| | ||||| ||||||| | |||| || |||| |||||| Sbjct 40096270 CTGCTTCCCCAACGTCTTCGTGGCCAGCCGGCTGGAGCACGTCGTCTACGCGTCCTGGTC 40096329 Query 13907 TCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTG-GACGCCTCCCCCGTCAAGTGGA 13965 ||| ||||||||||||||| ||||||| ||||||| |||| |||| ||| Sbjct 40096330 GCGCCTGCAGGCCGACCTCAACTGCATGGAGGACCTGCTGCGCC-GGCCCGAGCCCTGGC 40096388 Query 13966 GGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGC 14025 | |||||||||||| ||||| | |||||||| |||||||||||| |||||||||| Sbjct 40096389 GCTACCTGCTCAACACCTGCGGCACCGACTTCCCCCTCAAGACCAACGCCGAGATCGTGC 40096448 Query 14026 GGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCC-CAACCA- 14083 |||| ||| || || | ||| ||| | ||||| || | ||| || | ||| Sbjct 40096449 GGGCCCTGCAGCTGCTCCGTGGCCGCAACAGCATGGAG-TCG-GAGCAGCCCTCTGCCAT 40096506 Query 14084 CAAGCTGCACCGC-ATCAGGA--AGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAA 14140 ||||| || ||| || | || || ||| | || || | | ||||| Sbjct 40096507 CAAGCGCCAGCGCTGGCACTACCAGTACCAAGTGTCTGGGAGTGGTGCCCTGGTG---CC 40096563 Query 14141 CACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCC---ATCTTTGCGGGAAACGC 14197 |||| || || |||| ||| |||||||| | | | || || || |||| || || Sbjct 40096564 CACCAGCGTGACCAAGAGCCCCCCGCCGCTGGGTAGCGCCAAAATGTTCACGGGCAATGC 40096623 Query 14198 TTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCC----GGTG- 14252 ||| | | ||| || || || |||||| | | |||| ||| ||||| |||| Sbjct 40096624 CTACATAGTGGTGACGCGAGACTTCGTGCGCCACATCCT---GGA-GAGCCCCGAGGTGC 40096679 Query 14253 -GC-CCTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCA 14310 || ||||| || |||| | |||||||||||||||| || |||||| ||||||||| Sbjct 40096680 AGCGCCTGC---TGGCCTGGGCCCAGGACACGTACAGCCCAGATGAGCACGTGTGGGCCA 40096736 Query 14311 CCGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTC-ACGTCAAGTACGACACC 14369 | | ||| | || |||| ||||| | ||| | ||| ||||||| | Sbjct 40096737 CGCTACAGCGCCTG-CCGGGCGTGCCGGGCTCCTTGCCGCCCAACGACAAGTACCATCTG 40096795 Query 14370 TCGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAG 14429 || |||||| ||| || | || ||||||||||| ||| ||||| || || | Sbjct 40096796 TCTGACATGAATGCCCTGGCACGCTTTGTCAAGTGGCAGTACCTGGAGGGCGACATAGGG 40096855 Query 14430 AAAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGG 14489 ||||| | ||||| || ||| ||||| ||| |||||||||||||||| ||| Sbjct 40096856 CGGGGGGCACCCTACCCACCGTGCACCGGCACGCACCGGCACGCCATCTGCATCTACGGC 40096915 Query 14490 TCCGGCGACGTGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGA 14548 || ||| || ||| || ||| | |||||| | ||||||||||| ||| Sbjct 40096916 CTGGGAGACCTGCCCTGGATGCTCCAGC-AGCAACACCTGCTGGCCAACAAGTTTGAC-C 40096973 Query 14549 CGAG-ACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 ||| ||||||| || |||| || ||||| ||| || ||||| Sbjct 40096974 TGAGTGTGGACGAGCAGGCGGTGCAGTGCCTGGAGGAGCACCTGCGC 40097020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658738533026560