Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq38 98.7 8e-16 seq70 82.4 6e-11 >seq38 Length=209695328 Score = 98.7 bits (108), Expect = 8e-16 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| || | || |||||||| ||||| ||||||||||| || || || ||||| | | Sbjct 98356063 TCATATCTTTATATTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACAGGTCCTAAAT 98356122 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 | || || | ||||| ||| || || ||||| || || | || || ||||| | Sbjct 98356123 CACCTTCCACTCTGTGGGTGAAACCTTGTTTATCCAAGAACTCACGTGATCCATTGGCAT 98356182 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||| ||||| || ||||| ||||||||||||| | ||||| || || Sbjct 98356183 CCCAAATCTTGACTCCCTTTGCAGAGAGCTCTTTAGCATTTGTAGAGCC 98356231 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| || || || ||||| |||||||||||||| || || || ||||| || || || || Sbjct 98350424 TAGGCCTGTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATATTGAAAGG 98350483 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060 || || || ||||| || || || ||||| || ||||| || || ||||| || | Sbjct 98350484 CACTCCTAGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCGCCATTTAC 98350543 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 || || || || || | || ||||| || || | |||||| Sbjct 98350544 AACATAGAATTGGCAGAGAGCATGGCAAGGGGGTAAAGCCAT 98350585 >seq70 Length=183555969 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 110404 AGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 110463 || || |||||||| |||| ||| || || ||| | | ||| | |||||| || || || Sbjct 22963147 AGTTCTCTGCTGAGCACTATGTTAATTCTATCTTTTAAAGGACGATTCTTCTCAGGAATA 22963088 Query 110464 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 |||||||| ||||| |||||||||||| ||| || || || ||| Sbjct 22963087 GAGAACCAGGTCTTCTTACCCATTATCAACACATTTTGTTTACCT 22963043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309998895452