Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq38 147 2e-30 >seq38 Length=209695328 Score = 147 bits (162), Expect = 2e-30 Identities = 125/154 (81%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| ||||||||||||||||| | ||||| ||||| ||||| ||||| |||| Sbjct 98350434 ACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATATTGAAAGGCACTCCTAGT 98350493 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| ||||| |||| ||||| |||||||| || ||||| ||||| | || |||||| Sbjct 98350494 CCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCGCCATTTACAACATAGAAT 98350553 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCA 6770 |||||||| | ||||| ||||| | ||||||| Sbjct 98350554 TGGCAGAGAGCATGGCAAGGGGGTAAAGCCATCA 98350587 Score = 147 bits (162), Expect = 2e-30 Identities = 125/154 (81%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34575 TGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGT 34634 ||||||| | ||||| ||||| | |||||||||||||| || | ||||| ||||| | Sbjct 98350587 TGATGGCTTTACCCCCTTGCCATGCTCTCTGCCAATTCTATGTTGTAAATGGCGAGCTTT 98350528 Query 34635 CCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTA 34694 | |||||||| ||||| |||| ||||| ||||| |||| ||||| ||||| ||||| | Sbjct 98350527 CTTGCCAGCTGTATCAGAGATCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 98350468 Query 34695 GTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 |||| | ||||||||||||||||| |||||||| Sbjct 98350467 GTTATTCACTGCTCACGTACATGATTGCTCATGT 98350434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261946134320