Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq38 118 9e-22 seq39 93.3 3e-14 >seq38 Length=209695328 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| |||||||| ||||| ||||||||| | ||||| || ||||||||| Sbjct 44003287 GTAGTGGAGGAGCTGTTCCGAGACGGGGTGAACTGGGGGAGAATTGTGGCCTTCTTTGAG 44003228 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||| ||||| || ||||| | | || | ||||||| |||||| Sbjct 44003227 TTCGGTGGCGTGATGTGCGTGGAGAGTGTCAACCGGGAGATGTCGCCCCTCGTGGACAAC 44003168 Query 3365 ATTGCCGCGTGGATGACAGA 3384 ||||| | |||||||| || Sbjct 44003167 ATTGCAACATGGATGACGGA 44003148 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||||| |||||||||||||| || | || || ||||| | ||| ||||| Sbjct 98350425 AGGCCTGTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATATTGAAAGGC 98350484 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||| ||| | |||||||| |||| |||||||| ||||| || ||| || Sbjct 98350485 ACTCCTAGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCGCCATTTACA 98350544 Query 118654 ACATAAAACTG 118664 ||||| || || Sbjct 98350545 ACATAGAATTG 98350555 >seq39 Length=85626906 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 3244 AGTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGA 3303 ||| || || ||||| |||||||| || || |||||||| | ||||| || || || Sbjct 73392776 AGTAGTAGAGGAGCTGTTCCGAGACGGAGTGAACTGGGGAAGAATTGTAGCCTT----GA 73392721 Query 3304 GTTTGGTGGTGTTATGTGTGTG--GAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGAC 3361 ||| ||||| || ||||||||| || || ||||| | | || | ||||||| ||| Sbjct 73392720 GTTCGGTGGCGTGATGTGTGTGTGGAGAGTGTCAACCGGGAGATGTCGCCCCTCGTGGAC 73392661 Query 3362 AACATTGCCGCGTGGATGACAGA 3384 |||||||| | ||||||||||| Sbjct 73392660 AACATTGCAACATGGATGACAGA 73392638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414476390833684