Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq58 167 5e-36 seq47 125 2e-23 seq64 84.2 5e-11 >seq58 Length=12078735 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| |||||||| || || |||||||| || || | ||||| | |||||| Sbjct 9617002 AGCACCAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 9617061 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| ||||| |||||| Sbjct 9617062 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 9617121 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || ||||||||| | |||||||| || ||||| ||| Sbjct 9617122 TGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 9617181 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 9617182 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617213 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 9617686 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 9617745 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| ||||| |||||| Sbjct 9617746 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 9617805 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | ||||| || || ||||| ||| Sbjct 9617806 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATTGTC 9617865 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | |||||| || Sbjct 9617866 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 9617900 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 9617230 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 9617289 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| ||||| |||||| Sbjct 9617290 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 9617349 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || ||||||||| | |||||||| || ||||| ||| Sbjct 9617350 TGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 9617409 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 9617410 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617441 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 9617458 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 9617517 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| ||||| |||||| Sbjct 9617518 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 9617577 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || ||||||||| | |||||||| || ||||| ||| Sbjct 9617578 TGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 9617637 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 9617638 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 9617669 >seq47 Length=35171843 Score = 125 bits (138), Expect = 2e-23 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 26675268 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 26675209 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG-TCAGGAGGAACTCCTTCCTTGTC 211021 |||||||||||||| || ||||| || ||| | || | || || | |||| Sbjct 26675208 TCCAGCTGCTTGCCAGCAAAGATGAG-CGTCGGGGGGTGGGGGGGGAGGGGGGTTTTGTT 26675150 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||||||| |||||||| || ||||||||| | || |||||||| ||||| || Sbjct 26675149 TTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 26675090 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| ||||| || ||||||||||| | |||||| || Sbjct 26675089 CTTGCCCGTCAGGGTCTTTACAAAGATCTGCATCTT 26675054 >seq64 Length=15301441 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || ||||| ||||||||||| | || ||||| Sbjct 14256352 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCC 14256411 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| ||||| | |||||| Sbjct 14256412 AGCGTGATGGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 14256455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150797017565