Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq58 129 1e-24 seq47 87.8 4e-12 >seq58 Length=12078735 Score = 129 bits (142), Expect = 1e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| ||||||||||| || |||| ||||| || | || || Sbjct 9616993 CGGAGACGCAGCACCAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTG 9617052 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| ||||| ||||| || | || ||||| || ||||| ||| Sbjct 9617053 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCT 9617112 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| || ||||| ||||||| || |||||||| || || || || | Sbjct 9617113 TCTTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGG 9617172 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 9617173 GTGATGGTCTTGCCAGTCA 9617191 >seq47 Length=35171843 Score = 87.8 bits (96), Expect = 4e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || || ||||| || || |||| ||||| || | || || | ||||| Sbjct 26675269 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 26675210 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGG-TCGGGCGGAATACCTTCCTTGT 225619 ||| |||||||| ||||| ||||| || ||| | || | ||| || | |||| Sbjct 26675209 TTCCAGCTGCTTGCCAGCAAAGATGAG-CGTCGGGGGGTGGGGGGGGAGGGGGGTTTTGT 26675151 Query 225620 CTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 ||||||||| |||||| || |||||||| || ||||| || | ||||| | Sbjct 26675150 TTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGG 26675091 Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||||||| || |||| || | ||||| || Sbjct 26675090 TCTTGCCCGTCAGGGTCTTTACAAAGATCTGCATCTT 26675054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529962376214