Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq38 95.1 9e-15 >seq38 Length=209695328 Score = 95.1 bits (104), Expect = 9e-15 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 ||| || || || ||||| |||||||||||||| || || || ||||| || || || || Sbjct 98350424 TAGGCCTGTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATATTGAAAGG 98350483 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326 || || || ||||| || || || ||||| || ||||| || || ||||| |||| Sbjct 98350484 CACTCCTAGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCGCCATTTAC 98350543 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 || || || || || | || ||||| || || | |||||| Sbjct 98350544 AACATAGAATTGGCAGAGAGCATGGCAAGGGGGTAAAGCCAT 98350585 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 |||| || | || |||||||| ||||| ||||| ||||| || || || ||||| | | Sbjct 98356063 TCATATCTTTATATTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACAGGTCCTAAAT 98356122 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 | || || | ||||| ||| || || ||||| || || | || || ||||| | Sbjct 98356123 CACCTTCCACTCTGTGGGTGAAACCTTGTTTATCCAAGAACTCACGTGATCCATTGGCAT 98356182 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||| ||||| || ||||| | ||||||||||| | ||||| || || Sbjct 98356183 CCCAAATCTTGACTCCCTTTGCAGAGAGCTCTTTAGCATTTGTAGAGCC 98356231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506835227111