Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq74 102 1e-16 seq78 89.7 7e-13 seq38 89.7 7e-13 >seq74 Length=41239083 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | || |||||||| ||||| || ||||||| ||| | ||| || Sbjct 8041923 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 8041864 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 | |||||| || | || ||||| ||||||||||| || |||||||| || ||||| || Sbjct 8041863 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAGC 8041805 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | |||||||| || || | ||||| || || || || |||||| Sbjct 8043269 GACATGACTCCCATCCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTTGTCTTGCCT 8043210 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGC 47935 || | ||| || || |||||||| ||||||||||| |||| Sbjct 8043209 TCAAGTGAGATGTTCTCCATAAAGTCAAATGGATTCTCTGC 8043169 >seq78 Length=264820526 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | |||| || ||||| || ||||| ||||| || || | ||| Sbjct 1208573 TGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTAGTATAGGGCTCGATGGAT 1208514 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 ||||| || |||||||| ||||| || |||||||||||||| || Sbjct 1208513 TCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGG 1208470 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 77999 CTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCT 78058 || ||| |||||||| ||||||||||| ||||| || |||| || || || | | || Sbjct 1192777 CTCAACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCG 1192718 Query 78059 ATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCA 78118 || || || || || || ||||| || | |||||||||||| | ||||| | ||||| Sbjct 1192717 CTGCTCCTCCTTCCCCGTGTTCTTCTTCAAATCGAGAAACTCAAAGATATCCAAGTGCCA 1192658 Query 78119 TGGTTCTAGATATATTGCCATAACTCCAGGTC 78150 || || || || || || | | | || |||| Sbjct 1192657 CGGCTCCAGGTAAATGGCAAAAGCCCCGGGTC 1192626 >seq38 Length=209695328 Score = 89.7 bits (98), Expect = 7e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG 48698 || ||||| ||||||||||| ||||| | ||| | ||| ||||| |||||||||||| | Sbjct 163314032 ACCTCTTCTGCTGTCCAAAAGGATGCTTGTGCCTGTTTGTACATTTTCCATATATCAGGG 163314091 Query 48699 TATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTT 48737 || ||||| ||||| || ||||||| | || |||||| Sbjct 163314092 TACTGGATAGGGAAGATGACAAATCGACGAGGGTTTTTT 163314130 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | || || || || || || || ||||| || || | || || Sbjct 163297300 TCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 163297359 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || |||||||| || ||||| || ||||| || || ||||| || Sbjct 163297360 AGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGGC 163297418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668096647840