Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq39 152 7e-32 seq57 147 3e-30 >seq39 Length=85626906 Score = 152 bits (168), Expect = 7e-32 Identities = 213/299 (71%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || ||| | ||||| || || | | || | ||||| || Sbjct 50687749 AAGGGACAACCCTTTACATTGTTGCAGACGAGTTTTTGCAGGGAGGCAGTGTTGACTATT 50687808 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 | || || || ||| || || ||||| |||||||||||| | || |||||||| | Sbjct 50687809 TCAAATCCTACTCTTCCACCAAAAGTGCTAGGCTTCCAGTACTCAGGAGAGCAGATAGCA 50687868 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| |||||||| | ||||| || || || | ||| | ||| ||||||| ||| Sbjct 50687869 TTTCCCATCAGGCCTTTCAACGAGAATGGTGCTCCAAGCTCTACCATGGTCTCACCAAAG 50687928 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||| ||||||||||||||||| || | || | |||||||||| ||| || | | Sbjct 50687929 ATGGCTCCTGGACGGGGCTTTTCCACTAACAGACCAGGATACAGCTCCATAGCATCAATG 50687988 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGTTTTATTAATAAA 8598 ||||| ||||| | | |||||| || || || ||||||||| |||||| ||| Sbjct 50687989 TCTCCATAAAGCTCTTCCAATTCGGCTGCCATTTCTTTTTCTCCTAAAATATTAACAAA 50688047 Score = 102 bits (112), Expect = 1e-16 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || || ||||| | | || ||| |||||||||||| || || || || Sbjct 50690140 ATGAGTCTGGTAGTTTGGAATAACCGTTCATCATCCCATTCTGGATGCTCCTGCTTAAGG 50690199 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||| ||||||||||| || || || |||||||| | || || Sbjct 50690200 ATGTCACAGACCCGGTTGTGCTCCCTGAGCCATATGGTAGCATACATCATTAAACCTGGG 50690259 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| ||||| | || || || |||| | | | || || || || | |||||| Sbjct 50690260 ACCAGACCAAACACTTCCTGTCCTACAGAGAATTGTAGGTGCTCAGGAACATGAGGAGGA 50690319 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || | ||| | | || || || || | || || |||||||| || |||||||| Sbjct 50690320 TATAGCATTTCTGCTTGAGTATCCTTCACTGTTGGAGGGTACATTTCTCCACCAATCATC 50690379 Query 9484 T 9484 | Sbjct 50690380 T 50690380 >seq57 Length=27084703 Score = 147 bits (162), Expect = 3e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 ||||||||||||||||||||||||||| | |||||||||||| |||| ||| || || Sbjct 23767897 CCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGTTCCCCAGCAGCCCC 23767838 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 ||||||||||| || ||||| | ||| | |||||||| || ||||||||||||| | Sbjct 23767837 TTGAGGGAGAAGGGGGCCCCGATCTCCACCATGCTCTCCCCAAAGATGGCGTTGGCTTGC 23767778 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 ||||| |||| || | || | ||| | ||||| || | || ||| ||||| || || Sbjct 23767777 GGCTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGGGCATTGATGTCGCCGTACAGCTCC 23767718 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | || || |||||| ||||||| Sbjct 23767717 TCCAGCTGCGCCGCTTTCTCCTCCTCTCCTG 23767687 Score = 125 bits (138), Expect = 1e-23 Identities = 184/258 (71%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || || |||||||| || |||||||| | ||| || || Sbjct 23766199 TCACCGATGAGGATGAGCCGGGTCGTCTGGAAGAGCTGCTCGTCGCCCCACGTCGGGTGC 23766140 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || ||||| | ||||| || | |||||| || | |||||||| || ||||||||| Sbjct 23766139 TCCTGCTTCAGCAGGTCGCAGACGCGGTTGTGCTCGCGGAGCCAGAGGGTCGCGTACATC 23766080 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTT---CG 9408 || ||||| || | ||| ||||| |||| || || || ||||| || | | | || Sbjct 23766079 ATCAGCCCGGGCAGCAGCCCAAACACCTCCTGGCCCACGGCCAGCTGCTTCTCCTGGCCG 23766020 Query 9409 G-GCACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACAT 9467 | || || ||| ||||||||||||||| | | || |||| |||||| |||| Sbjct 23766019 GTGCCGTTGGGG----TAGATCATGTGCACCGGCGCCTCGAGCACCGTGGGGGGGTACAC 23765964 Query 9468 TTCACCGTCAATCATCTG 9485 || ||||| | || ||| Sbjct 23765963 CTCCCCGTCCACCACCTG 23765946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716876074162240