Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavialis_20gangeticus_20[refseq_20GCF_5F001723915.1_202016-09-13] 81 sequences; 2,640,792,433 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq58 134 3e-26 seq47 86.0 2e-11 >seq58 Length=12078735 Score = 134 bits (148), Expect = 3e-26 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 9617438 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 9617381 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || |||||||||||||||||||| || || || ||||||| Sbjct 9617380 ACACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAGC 9617321 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 9617320 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 9617261 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| || ||||| || || || | ||||| Sbjct 9617260 TCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTCAG 9617221 Score = 134 bits (148), Expect = 3e-26 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 9617666 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 9617609 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || |||||||||||||||||||| || || || ||||||| Sbjct 9617608 ACACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAGC 9617549 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 9617548 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 9617489 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| || ||||| || || || | ||||| Sbjct 9617488 TCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTCAG 9617449 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 9617210 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 9617153 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || |||||||||||||||||||| || || || ||||||| Sbjct 9617152 ACACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAGC 9617093 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 9617092 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 9617033 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || ||||| || || Sbjct 9617032 TCCAGAAGGAATCCACTCTGCACCTGGT 9617005 Score = 125 bits (138), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| || || || || ||| Sbjct 9617894 CAGATCTTTGTGAAGACCCTGACTGGCAAGACAATCACCCTGGAAGTTGA--GCCCAGTG 9617837 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||||||||| || || || ||||||| Sbjct 9617836 ACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGC 9617777 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 9617776 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 9617717 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| || ||||| || || || | ||||| Sbjct 9617716 TCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTCAG 9617677 >seq47 Length=35171843 Score = 86.0 bits (94), Expect = 2e-11 Identities = 156/223 (70%), Gaps = 9/223 (4%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || || || || || || || || || || ||||||||||||| Sbjct 26675049 AGGTAAAGATGC---AGATCTTTGTAAAGACCCTGACGGGCAAGACCATCACCCTCGAGG 26675105 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||| ||| || |||||||| |||||||| || ||||| || ||||| | Sbjct 26675106 TGG--AGCCCAGTGACACCATTGAGAACGTGAAGGCCAAGATCCAAAACAAAACCCCCCT 26675163 Query 178028 CCCTCCGGA-CCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086 ||| || | || | ||| || ||||| || || || ||||| |||||||| | || | Sbjct 26675164 CCCCCCCCACCCCCCGACG-CTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCC 26675222 Query 178087 TTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | || || ||| |||| || || || || |||||||| || Sbjct 26675223 TGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCATCTGGT 26675265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729950752714