Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5570 96.9 4e-15 seq15771 89.7 5e-13 >seq5570 Length=534135 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||| ||||| || ||||| || | ||||||||| || ||||||| Sbjct 272151 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCGGGCATCAGCCCCCGTTTCT 272092 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | |||||||| || | || || || ||||||||||| ||||| || || | || || | Sbjct 272091 TCAACCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATACCTTCCACTGCAGCGAAAG 272032 Query 17106 CGATTAATCGTTC 17118 | | || ||||| Sbjct 272031 CAACTATGCGTTC 272019 >seq15771 Length=129986 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 ||||| || |||||||| ||| | ||||| |||||||| |||||| | ||||| | | Sbjct 47843 CCCACATAGCCGTTGGGGTCCCTGCCATCCAACTCGTAGCGATCGTTGAGATAGATGCTG 47784 Query 119921 ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATA 119980 | | || || |||||| | | |||| ||||| || || || ||||||||||| Sbjct 47783 AATTTCAAGGCCTCTTCAGGGGAGCTGGTCCACTCCAGGATCTTCTTGGCCCAGTACATC 47724 Query 119981 CGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTG 120024 |||| | |||||||| || ||||| | ||||| || || || Sbjct 47723 CGTAGAAACCCATGCATCTTCCCTTCGTGGACCATCTGGAGCTG 47680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516306725220000