Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq12327 199 3e-46 seq17341 109 4e-19 seq15656 82.4 6e-11 >seq12327 Length=684964 Score = 199 bits (220), Expect = 3e-46 Identities = 382/560 (68%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 3977 TCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCA---CATTAGAAA 4033 |||| ||||| |||||| | ||||||| || | |||||||| | | ||| ||| Sbjct 30425 TCTTTTCATACACTTCAGACTTGTACTGGATGCCATTCTCTTCCTAAATACCATCAGATG 30366 Query 4034 GAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGG 4093 ||| || ||| || || || ||| ||| || ||||| ||||||||| || | Sbjct 30365 ---CACCTGAGTATCCTTGCAGAATCTTGAATTGTATTAAATCAATTTCTGGAAATAATG 30309 Query 4094 TGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAAC 4153 | |||| |||||||| || | |||||| ||| || || | ||| | ||| | Sbjct 30308 TATCACCTTCAAAGTACTGGAAGATCCTTCTCAGAA-CACTAGCTGATGGATTGGCTTCT 30250 Query 4154 TCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTG 4213 ||| ||| | ||||| || |||| ||||| |||||||| ||||||||| |||| Sbjct 30249 CCATTGCTGCCTTATATACCAAACTGCCTCCTATTATCCAAGCCATGTCTATCAGTTTTG 30190 Query 4214 CTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAG 4273 | || ||||| ||| || | || | ||||||| | | ||||| ||| ||| Sbjct 30189 CCAACTCTGGTAATTCT---AGATCTAGTGTCTCATCTAGAGTTCTAGCTGAAACGGGAG 30133 Query 4274 CTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAG 4333 ||| | || | |||||| || || ||||| || | |||||||||||| ||||||| Sbjct 30132 CTCCTTCAGGCATTTCCTTTCATTGTTTCCTGAGCACTATATTAATTCTGCCATTTAAAG 30073 Query 4334 GCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTT 4393 ||||| | || |||||||| |||||||||||||| |||||||| ||||||| ||| ||| Sbjct 30072 GCCGGATTTTTTCAGGAATGGAGAACCAAGTCTTCTTACCCATTATCACTACATTTTGTG 30013 Query 4394 TATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTC 4453 | || | || || | |||||| | || |||| | || |||||| | ||| Sbjct 30012 TTCCTTTCTGTGTAGTAGTTCTGGTCATTTTCTGAAAATATGCAAGCTCATTCTTGAGTG 29953 Query 4454 TTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAACAATGC 4513 ||||| | | | || | || ||||| | || || || | |||||| ||||| Sbjct 29952 GGGGCCACAGAAGCTGTCCGTCCTTCCCAATACTTATATTCTGGGACACAGCAGCAATGG 29893 Query 4514 AGTTTAGTGCTTGAACCATA 4533 || | | || ||||||||| Sbjct 29892 AGCTGAATGAGTGAACCATA 29873 >seq17341 Length=551875 Score = 109 bits (120), Expect = 4e-19 Identities = 94/115 (82%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| |||| |||||||| || | |||||||||||||||||||||||| | || ||||| Sbjct 132673 CTTCAGTTGTTTGCTGAGCACTATATTAATTCTGCCTTTTAAAGGCCGACTTTTTTCAGG 132732 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTGGTACA 4404 ||| ||||||||| |||| ||||||| ||||||| || ||||| || ||||| Sbjct 132733 AATGGAGAACCAACTCTTCCTACCCATTATCACTACGTTTTGTTT-TCCTGTACA 132786 >seq15656 Length=1245196 Score = 82.4 bits (90), Expect = 6e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 |||| ||||||||||| | || | ||| ||||| || ||||| || || || ||||| Sbjct 954116 GTGATGTGAGCAATCATCAACGTAAGAAGCGAATAACTTGCAATATTGAAGGGTACTCCC 954175 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 || ||||| || |||| | ||||||| |||||||| || | || | | ||||| Sbjct 954176 AAACCCATGTCTCCTGACCGCTGATACAACTGACAGGAGAGTTCACCGTTTAAAACATAG 954235 Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGA 101922 || || | | ||||||| || ||||| ||||| || || ||||| Sbjct 954236 AACTGGCAGAGAGCATGACATGGAGGCAAGGCCATTGCAGAGATATCTGA 954285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360408073566500