Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5570 111 2e-19 seq1710 93.3 5e-14 >seq5570 Length=534135 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| |||||||| |||||||||||||| || || || || | Sbjct 272151 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCGGGCATCAGCCCCCGTTTCT 272092 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | |||||| || || ||||| || ||||||||||| || ||||| ||||| || || | Sbjct 272091 TCAACCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATACCTTCCACTGCAGCGAAAG 272032 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | | |||||| Sbjct 272031 CAACTATGCGTTCTCC 272016 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 23829 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 23888 ||||| |||||||| | || ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct 274434 GACATCACTCCCATCCTCTGATATTCTCCTACACGCTTTTCAAAAAAGTTGGTTTTGCCT 274375 Query 23889 TCTAATGATATATTTTCCATGAAATCGGATGGATT 23923 || | || |||||||||||||| || ||||||| Sbjct 274374 TCCAGGGAAATATTTTCCATGAAGTCAAATGGATT 274340 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 || || ||||| | | |||||||||||| ||||| |||||||| || || || || || Sbjct 271366 TAAGTGTCAATAAGCAAACTATACATTTCTGAATGGATGTTTTCCATAGCAATCTGGAAC 271307 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 || |||||||| | |||||| || | ||||||||| Sbjct 271306 CCATAGAAACAGCGAGCCTCTGTGACCTGTACTTC 271272 >seq1710 Length=997440 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 ||||||||||||||||| || || || | || || || ||||| ||||| |||||| || Sbjct 394418 ACTTCTTCCACTGTCCAGAAGGAAGCTTGAGCTTTCTTGTACATTTTCCATATGTCAGGA 394359 Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 24731 || || ||||| ||||| ||||||| | |||||||||| Sbjct 394358 TACTGGATTGGGAAAATGACAAATCGACGTGGATTTTTT 394320 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| ||||| | ||| ||||| || ||||| |||||||| || || | || || Sbjct 405047 TCATCTCTGCTAATGAGTTCATTGGAGAAAGTGAGCCCGGGCATCAGTCCTCTTTTCTTG 404988 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||||||||| | ||||| | ||||| ||||| || ||||| || || ||||| ||| Sbjct 404987 AGCCAAAATATAGCTGCAAAAGCGCCAGAGAAGAAGATCCCTTCAACAGCAGCAAAAGCA 404928 Query 24279 A 24279 | Sbjct 404927 A 404927 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 |||||||||||| ||||| ||||||||||||||||| ||||| | |||| || ||||| Sbjct 395693 ATTTTCATTCACGATTCCATCACTGGCTGCAAAAAATGCCAAGATATGTGAAATGAAATA 395634 Query 24581 TTTTTCGTCTGGTGTTAGTTTATTCCA 24607 ||||| |||||| | || || ||||| Sbjct 395633 CTTTTCTTCTGGTTTCAGCTTGTTCCA 395607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592300378920000