Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1216 113 8e-20 >seq1216 Length=204033 Score = 113 bits (124), Expect = 8e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 51895 GCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATA 51954 || || |||| ||||| ||||| ||||| || || || |||| || ||||||||||| Sbjct 104050 GCTTTGTGGTGGTACTTCATATCAAAAGGAATTGAGTATCTGGACACAGTATTTTTCATC 103991 Query 51955 CTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTT 52014 || || || || ||||| || | ||||| || || || ||||| ||||| ||||||||| Sbjct 103990 CTAAGAAAGAAGTTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTTCACTATGTTT 103931 Query 52015 ACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 || | | ||||| || || || ||| |||| ||||| ||| Sbjct 103930 ACCTTGTGGTGGATTGGCATAAAGTGGGTTGCAGGAGGGCAG 103889 Score = 104 bits (114), Expect = 4e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || |||||||||||||| | || ||||||||||||||||| ||||| | |||||||| Sbjct 98398 GCTTTTTTTGGAGCTCAAATTAACTCTTTTATCCATGTTATAATGTATATGTATTATGGA 98339 Query 52117 ATGGCCGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATA 52176 | || || ||||| || | || ||||| || ||||||||||| || || || || Sbjct 98338 TTAGCTGCCTGTGGCCCAAAATTTCACAAGTACCTTTGGTGGAAACGCTACCTGACCATT 98279 Query 52177 ATGCAGTTGGTA 52188 |||||| ||||| Sbjct 98278 ATGCAGCTGGTA 98267 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 52187 TACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTTTC 52246 |||| |||||| | |||| || || || ||| | || |||||||| ||||| || |||| Sbjct 95861 TACAATTCCATGTGACTATTGGCCACACAGCTTTTTCTATTTACATTGATTGTCCTTTTC 95802 Query 52247 CAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGGTA 52306 | |||||||| || ||| || ||| ||||| ||| ||| || | || ||||||| Sbjct 95801 CTAAATGGATGCATTGGAGTGTCATTTTCTATGCTACCTCTTTTATTATCCTTTTTGGTA 95742 Query 52307 ACTTCTATTTTAGAACATACAAGA 52330 ||||||| | | | |||||||||| Sbjct 95741 ACTTCTACTATCGGACATACAAGA 95718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920986897660000