Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1775 419 2e-112 seq4964 136 3e-27 >seq1775 Length=229576 Score = 419 bits (464), Expect = 2e-112 Identities = 701/1003 (70%), Gaps = 8/1003 (1%) Strand=Plus/Minus Query 107626 ATTACCTCAACATAACC-AGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAG 107684 ||||||| ||||| ||| ||| |||| || |||||| | |||| || ||| || Sbjct 42333 ATTACCTGAACATGACCCAGA-ACTGCAGGCTCTTCAAAGAGAGCAGGAGGTACATCCAA 42275 Query 107685 TTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAG 107744 ||||| ||||| || || || ||||||||||||||| || || |||||| |||| | Sbjct 42274 TTCCCGCTGAGCAACGAGGAAGAAGACTTCCCCATTGCTTATTCCATGGTGATCCACAAT 42215 Query 107745 AAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGT 107804 |||| |||| ||||| | || |||| || | || ||||||||||| ||||| Sbjct 42214 CAGATCGAAATGTTTGAGAAGTTGTTGCGGTCCATCTACGCCCCTCAGAATGCCTACTGC 42155 Query 107805 GTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGT-CAAGGCCATTATTTC 107863 ||||||| || | ||||||| | | |||||||||||||||| | |||| ||| || Sbjct 42154 ATCCACGTAGACGAGAAGTCCTCCAAACCTTTCAAAGAGGCGGTGCGAGGC-ATTGCCTC 42096 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 |||||| ||||||||| | || |||| ||| | ||||| |||||||| ||||| Sbjct 42095 CTGCTTTGACAATGTCTTTGTCGCATCTAAGCTGGAATCAGTGGTGTATGCCTCGTGGTC 42036 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAA 107983 ||| || ||||| ||||||||||| ||||||||| | || ||||| ||| | ||||| Sbjct 42035 CAGGGTTCAAGCCGACCTGAACTGCATGGAAGACCTCCTGAAGAGCAAAGTTCAGTGGAA 41976 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 |||| | ||||| || || ||||| || |||||||| |||||||| || ||||| |||| Sbjct 41975 GTACCTCCTGAACACCTGTGGGACCGATTTCCCCATCAAGACCAACGCGGAGATCGTCCG 41916 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaa 108103 | ||| || ||||| |||||| |||||| || ||| ||| ||| | || Sbjct 41915 CGTCCTGAAAGCATTGAACCAACAGAACAATATGGAATCAGAGAGACCGTCTTCCGCTAA 41856 Query 108104 aaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGAT 108163 | | | ||||||||||||| | | || |||| || | ||| | ||| | | Sbjct 41855 AGCACAACGCTGGAAATACCACCACGAAGTGAAGGATTCCGTGTCTCGGACCGATACCGT 41796 Query 108164 GAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTC 108223 |||| ||| || || || | ||||||||||| || ||||| ||| | |||| | | Sbjct 41795 GAAGAGCCCCCCTCCGCATGGATCCCCCATGTTCACCGGCAATGCTTATATCGTGGTCAC 41736 Query 108224 TCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGA-CTGGTTGAATGGG 108282 | | || || ||||| | || | |||| || ||| | | | || ||| Sbjct 41735 AAGGGAGTTCGTTCAACACCTTTTCAAAGACCC-AACGGTGAAACAGTTCCTAGAGTGGA 41677 Query 108283 TCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA 108342 ||| ||||| || || || |||||||| ||||||||||| || || || | | | ||| Sbjct 41676 ACAAGGACACTTACAGTCCAGACGAACATCTCTGGGCCACTCTGCATCG-GATGCCCGGA 41618 Query 108343 -TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCC 108401 |||| || || | || ||| || || ||| || || | ||||||| ||||| || Sbjct 41617 GTGCCAGGATCCATGCCCAGCAACGATAAATATGACCTCACGGACATGAACGCCATTGCA 41558 Query 108402 AGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCC 108461 ||| | || |||||| ||| ||||| |||||| || ||||| || || | || Sbjct 41557 AGGGTTGTGAAGTGGTCTTACTTAGAGGGGGATGTCCACAAAGGGGCTCCATACCCCCCT 41498 Query 108462 TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATT 108521 ||| | || || ||| |||| | ||||| ||||| || || ||||| ||||||| Sbjct 41497 TGCACGGGTGTCTCCCGGCGGGCGGTGTGCATCTACGGAGCGGGTGACCTCCACTGGATG 41438 Query 108522 CTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTG 108581 ||| | ||||||||| | || ||||| ||||| || ||||||||| ||| | | Sbjct 41437 CTCTCTCAGCATCACCTCCTAGCCAACAAATTTGATCCCTCGGTGGATGAATACGCCATA 41378 Query 108582 CAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGA 108624 ||||| | || |||||||| || | || || || ||||||| Sbjct 41377 CAGTGTCTGGAGGAGTACCTGCGGTACAAAGCAATATATGGGA 41335 >seq4964 Length=1309311 Score = 136 bits (150), Expect = 3e-27 Identities = 238/343 (69%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || ||||| |||||||| ||| || || |||| ||||| || ||||| || | || Sbjct 701773 CCTCTGAGCAAAGAAGAAGCAGAATTTCCACTTGCATACTCAATAGTGGTTTATCACAAA 701714 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||| | | ||||| | || ||| || | || ||||| || || ||| ||||| | Sbjct 701713 ATTAATATGTTTGATAGACTTCTGAGATCTGTATATGCACCCCAAAACTATTACTGCATT 701654 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || |||||| |||||||||||| | ||| | ||||| |||| ||| ||| || Sbjct 701653 CATGTGGATAAGAAGTCCCCAGAATCCTTCTTGGCTGCGGTGAAGGGGATTGCTTCATGT 701594 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||||||| || || || ||| || || ||||| || ||| |||| Sbjct 701593 TTTGACAATGTCTTCATTGCGAGCCAGCTGGAGAGTGTAGTGTATGCTTCGTGGAGCAGA 701534 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 |||||||| ||||| ||||| ||| ||||| | || ||| | ||| | | ||||||| Sbjct 701533 GTGCAAGCAGACCTCAACTGCATGAAAGACCT-CTACAG-GAGGAGTACAAGCTGGAAGT 701476 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || | || || || | || ||||| || |||||||| Sbjct 701475 ATTTGATCAACCTTTGTGGTATGGATTTCCCAATCAAGACCAA 701433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347455973271000