Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq15340 125 6e-24 seq10834 125 6e-24 seq5570 84.2 2e-11 >seq15340 Length=28550 Score = 125 bits (138), Expect = 6e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 |||||||| ||| |||||||| || || ||||| || || ||||| || || || || Sbjct 8267 ACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTC 8326 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || || ||||| || |||||||||||||||||||| || Sbjct 8327 CCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGGGGTC 8386 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 |||||||| ||| ||||||||||| || ||||| Sbjct 8387 CCCGTCTCCGTCTGGGACTCGATGATGGCGTACCACA 8423 Score = 120 bits (132), Expect = 3e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || ||||| |||| ||||||||||| ||||| || |||||||| || || ||||| ||| Sbjct 12862 TCCACGCGGTTCATGAAAAGATCCGGGATCCAGAGGGCGTAGAAGAGGTCCCGGGCACGC 12921 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 |||||| || |||||||| || |||| || | || || || | ||| |||||| Sbjct 12922 TGCTCCTCCTTCCCGGTGTTTTTCTTCAGGTCGAGGAACTCAAAGATGTCGAAATGCCAG 12981 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| ||||| | |||||| || |||||||||| Sbjct 12982 GGCTCCAGGTAGATGGCAAAGGCCCCCGGTCTCT 13015 >seq10834 Length=8617 Score = 125 bits (138), Expect = 6e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 |||||||| ||| |||||||| || || ||||| || || ||||| || || || || Sbjct 5608 ACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTC 5667 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || || ||||| || |||||||||||||||||||| || Sbjct 5668 CCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGGGGTC 5727 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 |||||||| ||| ||||||||||| || ||||| Sbjct 5728 CCCGTCTCCGTCTGGGACTCGATGATGGCGTACCACA 5764 >seq5570 Length=534135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||| || || |||||||| |||||||| || ||||| |||| |||||| || Sbjct 272031 GCTTTCGCTGCAGTGGAAGGTATCTTCTTTTCTGGTTCTTTTGCATCAATTTTTTGGTTG 272090 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 |||||||| || ||||||||||| || || ||| ||| || Sbjct 272091 AAGAAACGGGGGCTGATGCCCGGACTCACTTTTTCCAATGA 272131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444699346680000