Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5570 105 8e-18 seq1710 96.9 4e-15 >seq5570 Length=534135 Score = 105 bits (116), Expect = 8e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || ||||| |||||||||||||| || || || || | Sbjct 272151 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCGGGCATCAGCCCCCGTTTCT 272092 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | |||||| || || || || || || ||||||||||| ||||| |||||||| || | Sbjct 272091 TCAACCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATACCTTCCACTGCAGCGAAAG 272032 Query 33724 CAA 33726 ||| Sbjct 272031 CAA 272029 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct 274434 GACATCACTCCCATCCTCTGATATTCTCCTACACGCTTTTCAAAAAAGTTGGTTTTGCCT 274375 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || |||||||||||||| ||||| ||||| Sbjct 274374 TCCAGGGAAATATTTTCCATGAAGTCAAATGGATT 274340 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 ||||| || || | | |||||||||||| ||||| |||||||| || || ||||| || Sbjct 271366 TAAGTGTCAATAAGCAAACTATACATTTCTGAATGGATGTTTTCCATAGCAATCTGGAAC 271307 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 || |||||||| | |||||| || | ||| ||||| Sbjct 271306 CCATAGAAACAGCGAGCCTCTGTGACCTGTACTTC 271272 >seq1710 Length=997440 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 ||||||||||||||||| || || || | || || || ||||| ||||| |||||| || Sbjct 394418 ACTTCTTCCACTGTCCAGAAGGAAGCTTGAGCTTTCTTGTACATTTTCCATATGTCAGGA 394359 Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || |||||||||||||| ||||||| | ||||||| Sbjct 394358 TACTGGATTGGGAAAATGACAAATCGACGTGGATTT 394323 Score = 95.1 bits (104), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 |||||||||||| ||||||||||||||||||||||| ||||| | |||| || ||||| Sbjct 395693 ATTTTCATTCACGATTCCATCACTGGCTGCAAAAAATGCCAAGATATGTGAAATGAAATA 395634 Query 34028 TTTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| |||||| | || || ||||| Sbjct 395633 CTTTTCTTCTGGTTTCAGCTTGTTCCA 395607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| ||||| | ||| || || || ||||| |||||||| || || | || || Sbjct 405047 TCATCTCTGCTAATGAGTTCATTGGAGAAAGTGAGCCCGGGCATCAGTCCTCTTTTCTTG 404988 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||||||||| | || || | || || |||||||| ||||| || |||||||| ||| Sbjct 404987 AGCCAAAATATAGCTGCAAAAGCGCCAGAGAAGAAGATCCCTTCAACAGCAGCAAAAGCA 404928 Query 33726 A 33726 | Sbjct 404927 A 404927 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 33237 TAAAAGTCAACATCTAAAGAAAAATGATTGTC-TTC--TTGAGACATAACTCCCATTTTT 33293 || |||||| ||||||||| ||| ||| || ||| ||||| ||| ||| | | Sbjct 407494 TAGAAGTCAGCATCTAAAGTGAAAACATTATCGTTCGTTTGAGCCATCACTGCAAAGCGC 407435 Query 33294 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33353 ||||| || | || | |||||||| ||||| ||||||||||||| ||| || || ||| Sbjct 407434 TGGTACTCTGCAACCCTCTTTTCGAAGAAATTGGTTTTTCCTTCCAGTGAAATGTTCTCC 407375 Query 33354 ATGAAATCAAACGGATT 33370 ||||| ||||| || || Sbjct 407374 ATGAAGTCAAAGGGGTT 407358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628309974120000