Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5570 107 2e-18 seq1710 105 6e-18 >seq5570 Length=534135 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | ||||||||||| || ||||| || Sbjct 272149 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCGGGCATCAGCCCCCGTTTCTTC 272090 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||| || | ||||| |||||||||||||| || || ||||| || || || || Sbjct 272089 AACCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATACCTTCCACTGCAGCGAAAGCA 272030 Query 11774 ACTACTCTTTCTCC 11787 |||| | |||||| Sbjct 272029 ACTATGCGTTCTCC 272016 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11915 AAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGT 11974 |||||||||||||||||||| || ||||||||||| || || || ||||||||||| || Sbjct 271351 AAACTATACATTTCTGAATGGATGTTTTCCATAGCAATCTGGAACCCATAGAAACAGCGA 271292 Query 11975 GCCTCTGAACACTGTACATCC 11995 ||||||| |||||| ||| Sbjct 271291 GCCTCTGTGACCTGTACTTCC 271271 >seq1710 Length=997440 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| || || || | |||||||||| ||||| ||| | Sbjct 405049 CTTCATCTCTGCTAATGAGTTCATTGGAGAAAGTGAGCCCGGGCATCAGTCCTCTTTTCT 404990 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | |||||||||||| ||||| | ||||| ||||| || || || ||||| ||||| | Sbjct 404989 TGAGCCAAAATATAGCTGCAAAAGCGCCAGAGAAGAAGATCCCTTCAACAGCAGCAAAAG 404930 Query 11772 CTACTACT 11779 | || ||| Sbjct 404929 CAACCACT 404922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467403268760000