Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq505 116 5e-21 seq5570 109 7e-19 seq1710 93.3 6e-14 >seq505 Length=1558973 Score = 116 bits (128), Expect = 5e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAA-AAGCTGTAACAGATGCAAGAACAGATTGATGATAT 9285 ||| || |||||| || |||| | |||| | | ||| |||| |||||||||||||||| Sbjct 603030 TTACTTTTTATTAAATGCTTCTAGCAAGC-GCAGCAGGTGCAGAAACAGATTGATGATAT 602972 Query 9286 CCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTG 9345 |||| |||| ||||| | || || | || |||||||| || || || || ||||| Sbjct 602971 CCAAATAGAGGTTGATTGCAGCCAATATGTATTCTTCAGGAGATAGTTTGTGCATTAGCA 602912 Query 9346 AGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCA 9405 || |||||||||||||| ||||| ||||| | ||| || || ||||| | |||| Sbjct 602911 GATGAGTGTCATAGATAATAAATCCACAGAACAGAAGTGCTCCTGCAGCAGCAAATACCA 602852 Query 9406 GCTCCACTGTTTCACT 9421 |||| || |||||| Sbjct 602851 GCTCTGCTACTTCACT 602836 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || |||||| ||| |||||||| || || || |||| ||| ||| |||| ||||| ||| Sbjct 598543 CCAGCTCCAGCTTTGCTGAAATCCCTTTTGGACTGTAAAGTGTATACAGTGAGAGCCAGA 598484 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || |||||||| || || || ||||||| ||| | | || ||||||||||| || Sbjct 598483 AATACAGCAGTAGTAAGAATAAAGGCTTGCAGAACAATAGATACTTCATAGAAAGTCAC 598425 >seq5570 Length=534135 Score = 109 bits (120), Expect = 7e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| |||||||| |||||||||||||| || || || || | Sbjct 272151 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCGGGCATCAGCCCCCGTTTCT 272092 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | |||||| || || ||||| || ||||||||||| || ||||| ||||| || || | Sbjct 272091 TCAACCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATACCTTCCACTGCAGCGAAAG 272032 Query 36300 CAA 36302 ||| Sbjct 272031 CAA 272029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||||| |||||||| | || ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct 274434 GACATCACTCCCATCCTCTGATATTCTCCTACACGCTTTTCAAAAAAGTTGGTTTTGCCT 274375 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATT 35946 || | || |||||||||||||| || |||||||| Sbjct 274374 TCCAGGGAAATATTTTCCATGAAGTCAAATGGATT 274340 >seq1710 Length=997440 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| ||||| | ||| ||||| || ||||| |||||||| || || | || || Sbjct 405047 TCATCTCTGCTAATGAGTTCATTGGAGAAAGTGAGCCCGGGCATCAGTCCTCTTTTCTTG 404988 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 ||||||||||| | ||||| | ||||| ||||| || ||||| || || ||||| ||| Sbjct 404987 AGCCAAAATATAGCTGCAAAAGCGCCAGAGAAGAAGATCCCTTCAACAGCAGCAAAAGCA 404928 Query 36302 A 36302 | Sbjct 404927 A 404927 Score = 89.7 bits (98), Expect = 7e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 ||||||||||||||||| || || || | || || || ||||| ||||| |||||| || Sbjct 394418 ACTTCTTCCACTGTCCAGAAGGAAGCTTGAGCTTTCTTGTACATTTTCCATATGTCAGGA 394359 Query 36716 TATTGAATTGGAAAAATAACAAATCTATTTTGATTTTTT 36754 || || ||||| ||||| ||||||| | | |||||||| Sbjct 394358 TACTGGATTGGGAAAATGACAAATCGACGTGGATTTTTT 394320 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 36544 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 36603 |||||||||||| ||||| ||||||||||||||||| ||||| | |||| || ||||| Sbjct 395693 ATTTTCATTCACGATTCCATCACTGGCTGCAAAAAATGCCAAGATATGTGAAATGAAATA 395634 Query 36604 TTTTTCGTTTGGTGTTAGTTTATTCCA 36630 ||||| | |||| | || || ||||| Sbjct 395633 CTTTTCTTCTGGTTTCAGCTTGTTCCA 395607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656597298860000