Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5570 120 4e-22 seq1710 104 3e-17 >seq5570 Length=534135 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| |||||||| |||||||||||||| || || || || | Sbjct 272151 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCGGGCATCAGCCCCCGTTTCT 272092 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | |||||| || || ||||| || |||||||||||||| ||||| ||||| || || | Sbjct 272091 TCAACCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATACCTTCCACTGCAGCGAAAG 272032 Query 50102 CAAC 50105 |||| Sbjct 272031 CAAC 272028 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| |||||||| | || ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct 274434 GACATCACTCCCATCCTCTGATATTCTCCTACACGCTTTTCAAAAAAGTTGGTTTTGCCT 274375 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATT 49748 |||| || |||||||||||||| ||||| ||||| Sbjct 274374 TCCAGGGAAATATTTTCCATGAAGTCAAATGGATT 274340 >seq1710 Length=997440 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| ||||| ||||| ||||| || ||||| |||||||| || || | || || Sbjct 405047 TCATCTCTGCTAATGAGTTCATTGGAGAAAGTGAGCCCGGGCATCAGTCCTCTTTTCTTG 404988 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||||||||| | ||||| | ||||| |||||||| ||||| || || ||||| ||| Sbjct 404987 AGCCAAAATATAGCTGCAAAAGCGCCAGAGAAGAAGATCCCTTCAACAGCAGCAAAAGCA 404928 Query 50104 AC 50105 || Sbjct 404927 AC 404926 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 |||||||||||||||||| || || || | || || || ||||| ||||| |||||| | Sbjct 394419 TACTTCTTCCACTGTCCAGAAGGAAGCTTGAGCTTTCTTGTACATTTTCCATATGTCAGG 394360 Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||| |||||||||||||| ||||||| | ||||||| Sbjct 394359 ATACTGGATTGGGAAAATGACAAATCGACGTGGATTT 394323 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 49615 TAAAAGTCAACATCTAGAGAAAAATGATTATC-TTC--TTGAGACATAACTCCCATTTTT 49671 || |||||| |||||| || ||| |||||| ||| ||||| ||| ||| | | Sbjct 407494 TAGAAGTCAGCATCTAAAGTGAAAACATTATCGTTCGTTTGAGCCATCACTGCAAAGCGC 407435 Query 49672 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 49731 ||||| || | || | |||||||| ||||| ||||||||||||| ||| || || ||| Sbjct 407434 TGGTACTCTGCAACCCTCTTTTCGAAGAAATTGGTTTTTCCTTCCAGTGAAATGTTCTCC 407375 Query 49732 ATGAAATCAAACGGATT 49748 ||||| ||||| || || Sbjct 407374 ATGAAGTCAAAGGGGTT 407358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716549444060000