Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5570 89.7 5e-13 >seq5570 Length=534135 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/120 (78%), Gaps = 8/120 (7%) Strand=Plus/Minus Query 13913 TCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970 ||||||| | | ||||| |||| || |||||||| || ||||||||||| || || || Sbjct 271386 TCTCTTTGGGATCCTTGA--TGTAAGTGTCAATAAGCAAACTATACATTTCTGAATGGAT 271329 Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC--TGACCATTGTACCTCC 14028 |||||| ||||| ||||| || ||||| ||||| | ||| || ||||| ||||| ||| Sbjct 271328 GTTTTCCATAGCAATCTGGAACCCATAGAAACAGCGAGCCTCTGTGACC--TGTACTTCC 271271 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 || || || || ||||| | |||||||| | || | |||||||||||||| ||||| Sbjct 274437 TTTGACATCACTCCCATCCTCTGATATTCTCCTACACGCTTTTCAAAAAAGTTGGTTTTG 274378 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATT 13448 |||||||| || ||||||||||| || || |||||||| Sbjct 274377 CCTTCCAGGGAAATATTTTCCATGAAGTCAAATGGATT 274340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477443178060000