Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5570 118 1e-21 seq1710 105 9e-18 >seq5570 Length=534135 Score = 118 bits (130), Expect = 1e-21 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| |||||||| |||||||||||||| || || || || | Sbjct 272151 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCGGGCATCAGCCCCCGTTTCT 272092 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | |||||| || || ||||| || |||||||||||||| ||||| ||||| || || | Sbjct 272091 TCAACCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATACCTTCCACTGCAGCGAAAG 272032 Query 42207 CAA 42209 ||| Sbjct 272031 CAA 272029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| | || ||||| || ||||| ||||| ||||| || || || ||| Sbjct 274434 GACATCACTCCCATCCTCTGATATTCTCCTACACGCTTTTCAAAAAAGTTGGTTTTGCCT 274375 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || |||||||||||||| ||||| ||||| Sbjct 274374 TCCAGGGAAATATTTTCCATGAAGTCAAATGGATT 274340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 |||||||||||||||||| |||||||| || || ||||| || || |||||||| | || Sbjct 271349 ACTATACATTTCTGAATGGATGTTTTCCATAGCAATCTGGAACCCATAGAAACAGCGAGC 271290 Query 42412 CTCGGTAACCTGTACTTC 42429 ||| || ||||||||||| Sbjct 271289 CTCTGTGACCTGTACTTC 271272 >seq1710 Length=997440 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| ||||| | ||| ||||| || ||||| |||||||| || || | || || Sbjct 405047 TCATCTCTGCTAATGAGTTCATTGGAGAAAGTGAGCCCGGGCATCAGTCCTCTTTTCTTG 404988 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||||||||||| ||||| | ||||| |||||||| ||||| || || ||||| ||| Sbjct 404987 AGCCAAAATATAGCTGCAAAAGCGCCAGAGAAGAAGATCCCTTCAACAGCAGCAAAAGCA 404928 Query 42209 A 42209 | Sbjct 404927 A 404927 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||||||||| || ||||| || || |||| || || || ||||| ||||| || ||| | Sbjct 394419 TACTTCTTCCACTGTCCAGAAGGAAGCTTGAGCTTTCTTGTACATTTTCCATATGTCAGG 394360 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||| || ||||||||||| ||||||| | ||||||| Sbjct 394359 ATACTGGATTGGGAAAATGACAAATCGACGTGGATTT 394323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669532660540000