Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq500 93.3 6e-14 seq15340 84.2 3e-11 seq10834 84.2 3e-11 >seq500 Length=1993688 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/155 (73%), Gaps = 12/155 (8%) Strand=Plus/Minus Query 127393 ACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTTG--------CG-- 127442 ||||||||||||||| ||| || |||| || || || || | || || Sbjct 1025950 ACCTTGTACGGCATGGATTCAAAGAAGATGGAGGTGGCCGAGATCTTCTTCTTGTCCGTC 1025891 Query 127443 --GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGC 127500 ||| |||||||||||||| || |||||||||| ||| || ||||||||||| ||||| Sbjct 1025890 ATGAAGCCGTGCGTCAGGTGACCCCCGTCGGGCAAATCCAGCCCCATGATTCTGCCGTGG 1025831 Query 127501 GGTTTAACGATTCCAGTGTACACGGCAAAGTTGGC 127535 |||| || | | ||||| ||||||||||| || Sbjct 1025830 GGTTCCACCAGGGCGGTGTAGACGGCAAAGTTTGC 1025796 >seq15340 Length=28550 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| | |||||| | | | ||| ||||| || || |||||||| ||||||||| Sbjct 8424 CTGTGGTACGCCATCATCGAGTCCCAGACGGAGACGGGGACCCCGTACATGCTCTACAAG 8365 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || || || || || |||||||| | || |||| |||||||| || ||| ||| Sbjct 8364 GACTCCTGCAACCGGAAGAGCAACCAGCAGAACCTGGGGACCATCAAATGCAGCAACCTG 8305 Query 97299 TGCACGGAAATTGTAGAGTACGCC 97322 ||||| || || || |||||| || Sbjct 8304 TGCACCGAGATCGTGGAGTACACC 8281 >seq10834 Length=8617 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| | |||||| | | | ||| ||||| || || |||||||| ||||||||| Sbjct 5765 CTGTGGTACGCCATCATCGAGTCCCAGACGGAGACGGGGACCCCGTACATGCTCTACAAG 5706 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || || || || || |||||||| | || |||| |||||||| || ||| ||| Sbjct 5705 GACTCCTGCAACCGGAAGAGCAACCAGCAGAACCTGGGGACCATCAAATGCAGCAACCTG 5646 Query 97299 TGCACGGAAATTGTAGAGTACGCC 97322 ||||| || || || |||||| || Sbjct 5645 TGCACCGAGATCGTGGAGTACACC 5622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739285289540000