Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5570 91.5 1e-13 seq1710 87.8 2e-12 >seq5570 Length=534135 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 || ||||| || || | || ||||||||||||||||| || |||||||| || || ||| Sbjct 271369 ATGTAAGTGTCAATAAGCAAACTATACATTTCTGAATGGATGTTTTCCATAGCAATCTGG 271310 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 || ||||| ||||| | |||||||| ||||| ||||| Sbjct 271309 AACCCATAGAAACAGCGAGCCTCTGTGACCTGTACTTC 271272 >seq1710 Length=997440 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || || || || || || ||||| || |||| ||| | Sbjct 405049 CTTCATCTCTGCTAATGAGTTCATTGGAGAAAGTGAGCCCGGGCATCAGTCCTCTTTTCT 404990 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | |||||||||||| ||||| | || || || || || |||||||| || ||||| | Sbjct 404989 TGAGCCAAAATATAGCTGCAAAAGCGCCAGAGAAGAAGATCCCTTCAACAGCAGCAAAAG 404930 Query 13293 C 13293 | Sbjct 404929 C 404929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429976527483000