Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4607 138 3e-27 seq1216 136 9e-27 seq12296 134 3e-26 seq7398 132 1e-25 seq5570 111 4e-19 seq2823 111 4e-19 seq1710 111 4e-19 seq6172 98.7 2e-15 seq16745 89.7 1e-12 >seq4607 Length=116780 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || |||||||| || || | || ||| Sbjct 8352 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 8293 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || |||||||| || || ||||| || || ||||| ||| Sbjct 8292 TCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTGTCC 8233 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || || || | ||| || || || || ||||| || ||||| || Sbjct 8232 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTT 8173 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| | || || || || |||||||||||| Sbjct 8172 TTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTTG 8137 >seq1216 Length=204033 Score = 136 bits (150), Expect = 9e-27 Identities = 132/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 78479 ATTACTAGAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATC 78538 ||| || | || || |||||||| | || || |||||||| || || || || || | Sbjct 104059 ATTGCTGGGGCTTTGTGGTGGTACTTCATATCAAAAGGAATTGAGTATCTGGACACAGTA 104000 Query 78539 TTCTTCATCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTT 78598 || ||||||||| ||||||| ||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 103999 TTTTTCATCCTAAGAAAGAAGTTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTTC 103940 Query 78599 ACTATGTTTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 ||||||||||| ||| | ||||| || || || ||| | |||||||| || Sbjct 103939 ACTATGTTTACCTTGTGGTGGATTGGCATAAAGTGGGTTGCAGGAGGGCA 103890 >seq12296 Length=1996970 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || ||||| ||||| || || ||||||| || || | |||||||| Sbjct 759048 ACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGGGAGGGTGCGGCCGTCTTCC 759107 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | || || |||||||| || |||||| | || |||| || || || ||||||||||| Sbjct 759108 AACTGCTTGCCAGCAAAGATCAGCCTCCGCTGGTCAGAGGGGATGCCCTCTTTATCCTGG 759167 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||| || || || | ||| || || || || |||| || || || ||||| Sbjct 759168 ATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCCGCCTCCAGGGTGATGGTCTTG 759227 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| |||||||| Sbjct 759228 CCTGTCAGGGTCTTCACAAAGATCTGCAT 759256 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || ||||| ||||| || || | |||||| || || | |||||||| Sbjct 759276 ACAAGATGCAGGGTCGATTCCTTCTGGATTTTGTGGTCAGAGAGGGTGCGGCCGTCTTCC 759335 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | || || |||||||| || |||||||||||||| ||||| || || || || ||||| Sbjct 759336 AACTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCCTCCTTGTCCTGG 759395 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || || | || || | ||| || || || || |||| | ||||| ||||| Sbjct 759396 ATTTTGGCCTTCATGTTCTCAATGGTGTCACTGGGCTCCGCCTCCAAGGTAATGGTCTTG 759455 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 ||||| || || || ||||| | |||||| |||| Sbjct 759456 CCAGTTAGGGTCTTCACAAAGACCTGCATCTTGT 759489 >seq7398 Length=384992 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || ||||| || || |||||||| || || | || ||||| Sbjct 231980 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCA 232039 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || || ||||| || || ||||| || |||||||| || || ||||| ||||| Sbjct 232040 AGCTGCTTGCCGGCAAACATCAGTCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCCTGG 232099 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || || || || | ||| || || || || ||||| || ||||| || || Sbjct 232100 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTTTTG 232159 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||| | | || || || || |||||||||||| Sbjct 232160 CCATTCAAGGTCTTCACGAAGATCTGCATTTTG 232192 >seq5570 Length=534135 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||||||||| || || || |||||||| |||||||| || |||||||| Sbjct 272016 GGAGAACGCATAGTTGCTTTCGCTGCAGTGGAAGGTATCTTCTTTTCTGGTTCTTTTGCA 272075 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || ||||||||||||||| | || || ||||| ||| | ||||| || || ||| | Sbjct 272076 TCAATTTTTTGGTTGAAGAAACGGGGGCTGATGCCCGGACTCACTTTTTCCAATGAACTC 272135 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 272136 ATCAGCAGAGATGA 272149 >seq2823 Length=399890 Score = 111 bits (122), Expect = 4e-19 Identities = 141/197 (72%), Gaps = 14/197 (7%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || |||||||| || || | || ||||| || || || || Sbjct 388504 GTGGACTCTTTCTGGATGTTGTAGTCAGAGAGCGTGCACCCATCTTCCAGCTGCTTCCCT 388563 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || | || ||||||||||| ||||||||| Sbjct 388564 GCAAAGATCAGACGCTGCTGGT--------------TCCTTATCCTGAATTTTTGCTTTT 388609 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || ||||| ||||| || || || || || ||||| || ||| Sbjct 388610 ACATTCTCAATCGTGTCACTGGGTTCCACCTCAAGGGTGATTGTTTTCCCAGTCAGGGTT 388669 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 388670 TTCACAAAAATCTGCAT 388686 >seq1710 Length=997440 Score = 111 bits (122), Expect = 4e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||||||||| ||||| ||||| || ||||| || || ||||||| ||||| |||||| Sbjct 404926 GTTGCTTTTGCTGCTGTTGAAGGGATCTTCTTCTCTGGCGCTTTTGCAGCTATATTTTGG 404985 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 | ||||||||||| || ||||| || | |||||||| || ||| | || ||||| || Sbjct 404986 CTCAAGAAAAGAGGACTGATGCCCGGGCTCACTTTCTCCAATGAACTCATTAGCAGAGAT 405045 Query 269258 GAAG 269261 |||| Sbjct 405046 GAAG 405049 >seq6172 Length=309992 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| ||||||||||| |||||||||||||| || | || || || ||||| ||||| Sbjct 90343 CCTTCCTTATCCTGAATTTTTGCTTTTACATTCTCAATCGTGTCACTGGGTTCCACCTCA 90284 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || ||||| ||||| |||||||| Sbjct 90283 AGGGTGATTGTTTTCCCAGTCAGGGTTTTCACAAAAATCTGCAT 90240 >seq16745 Length=1836417 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 104365 AGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGC 104424 |||| | || ||||| ||||| ||||||||||| | || ||||| | |||||| ||||| Sbjct 88361 AGATACCTTTTGAATGTTATAATCAGATAGAGTGCGCCCATCTTCCAATTGTTTGCCAGC 88302 Query 104425 AAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 |||||| | | |||||||||||||| |||||| Sbjct 88301 AAAAATCAATCGTTGTTGATCAGGAGGAATTCCT 88268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148573336082000