Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq15190 149 9e-31 seq11181 123 4e-23 >seq15190 Length=331036 Score = 149 bits (164), Expect = 9e-31 Identities = 170/226 (75%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || || | || ||||| || || || |||||||| | || ||||||||| | | Sbjct 86229 CAAAGCCAACTTTGCCCCCGAAAGTACTTGGCTTCCAGTATTCAGGCGAGCAGATGGCAT 86288 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||||||||||||| | |||||| || ||||| || || | ||| ||||||| |||| Sbjct 86289 TACCCATGAGGCCTTTCAAGGAAAATGGTGCCCCAAGTTCTATCATGGTCTCACCAAAGA 86348 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCACAGCCTCGATG 8929 |||| || || ||||||| || |||||| | | | ||||| ||||| || || ||| Sbjct 86349 TGGCACCTGGGCGTGGCTTTT-CAACAAGAAGTGCTGGGTACAGCTCCATCGCATCAATG 86407 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||||| ||||| | ||||| ||||| ||||| |||||||||| Sbjct 86408 TCTCCATAAAGCTCTTCAAGTTCTGCAGCCATTTCTTTTTCTCCTG 86453 Score = 107 bits (118), Expect = 3e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || || | ||| || | || || || ||||| || || || |||||||||||| || Sbjct 88308 CCTATCAGGATCAGCCTGGTAGTTTGGAACAGCTGCTCATCGTCCCATTCTGGATGCTCC 88367 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 ||| || ||||| || || | ||||||||||| |||||| | ||||| |||||||| Sbjct 88368 TTTTTAAGTACATCACAGACCCGGTTGTGTTCCCGGAGCCATAAGGTAGCATACATCATC 88427 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 || || || |||| ||||| |||| || || |||| | ||| | || || || Sbjct 88428 AGTCCTGGAACCAAACCAAAGACCTCCTGTCCTACAGAAAACTGCAGGTGCTCAGGGACG 88487 Query 9793 TCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACC 9851 | ||| ||||| ||||| | ||||| ||||| || | || || ||||| || || Sbjct 88488 TTGGGTGGATATATCATCTCTGCCTGGGTTTCTTTCACAGTAGGTGGGTACATCTCTCC 88546 Score = 86.0 bits (94), Expect = 9e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGG-GCCTCGCGCCAAATCAGTCCTAA 10086 |||||||||||| || || |||| ||||||||||| ||| | | ||| ||| | | Sbjct 90588 TCTTACCCCATGGCCAAGGGCTTTTGTGAAGGCCGGCCCCTTGTG-GTGATCCGTCTTGA 90646 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 || ||||||| |||||||| ||| |||| || | ||||| | ||| ||||| || || | Sbjct 90647 AATACTGGTGGGTGAAATGCTGGGCAAAGAACGTGAACATAATGTTTGTGCCTTGAGGGT 90706 Query 10147 CGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 ||||| | || | |||| || ||| || || |||| Sbjct 90707 CGGGAATAAATTTTCTCCTCAGCAGAAACTTATCGACAA 90745 >seq11181 Length=1903394 Score = 123 bits (136), Expect = 4e-23 Identities = 180/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || || | |||||| | |||||||| ||||| || || ||| ||| ||| ||||| Sbjct 1357449 CCAATGAGGATGAGCCTTGTGGTCTGGAACAGCTGCTCATCATCCCAGGTTGGGTGTTCC 1357508 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 ||||| | || || || | |||||| |||| |||||||| || |||||||||||| Sbjct 1357509 TTCTTCAGTATGTCACAGACGCGGTTGTGCTCCCGCAGCCAGATGGTGGCGTACATCATG 1357568 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 || || || | |||||||| ||||||| || ||||| || ||| | ||| | Sbjct 1357569 AGGCCTGGTAGGAGGCCAAAGACCTCTTGGCCCACAGCAAGGCGCTGCTCCAGGGGGATG 1357628 Query 9793 TCGGGAGGATAGATCATGTGCACCTGGA-CATCTTTGACCGAGGGGGGATACATTTCACC 9851 | |||||||||||||||| ||||| | || |||| || |||||||| || || Sbjct 1357629 TGCTTTGGATAGATCATGTGCA-CTGGAGCTTCCAGCACCGTAGGTGGATACATCTCCCC 1357687 Query 9852 GTCAATAATCTG 9863 || ||| ||||| Sbjct 1357688 GTTAATCATCTG 1357699 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8725 CTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTT 8784 ||||| | ||| | || || ||| |||| || | | || || || || ||||| || Sbjct 1354495 CTGGAGTGATGCTGTGTTCACCATCTCAAAGCCAGTGGCACCACCAAATGTACTGGGCTT 1354554 Query 8785 CCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCC 8844 |||||| | || ||||||||| ||| ||| ||| ||||| | ||| || || ||||| Sbjct 1354555 CCAGTACTCAGGAGAGCAGATGGGATTCCCCAAGAGCCCTTTCAAGGAGAAGGGGGCCCC 1354614 Query 8845 CAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCC 8904 | || | ||||| || || || ||||| ||||| | ||| ||||||| || || Sbjct 1354615 AATTTCCACCATGCTTTCTCCAAAAATGGCATTGGGCTGCCTCTTCTCCACCAGCAAGCC 1354674 Query 8905 GGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 | ||| || |||| || || ||||||||||| Sbjct 1354675 AGGGTAGAATTCCATGGCATCAATGTCTCCGTA 1354707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706828768760000