Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5570 118 1e-21 seq1710 102 1e-16 >seq5570 Length=534135 Score = 118 bits (130), Expect = 1e-21 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || ||||| |||||||| |||||||||||||| || || || || | Sbjct 272151 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCGGGCATCAGCCCCCGTTTCT 272092 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | |||||| || || || || || |||||||||||||| ||||| |||||||| || | Sbjct 272091 TCAACCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATACCTTCCACTGCAGCGAAAG 272032 Query 33446 CAA 33448 ||| Sbjct 272031 CAA 272029 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| |||||||| | || ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct 274434 GACATCACTCCCATCCTCTGATATTCTCCTACACGCTTTTCAAAAAAGTTGGTTTTGCCT 274375 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 |||| || |||||||||||||| ||||| ||||| Sbjct 274374 TCCAGGGAAATATTTTCCATGAAGTCAAATGGATT 274340 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 ||||| || || | | |||||||||||| ||||| |||||||| || || ||||| || Sbjct 271366 TAAGTGTCAATAAGCAAACTATACATTTCTGAATGGATGTTTTCCATAGCAATCTGGAAC 271307 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCC 33687 || |||||||| | |||||| || | ||||||||| | ||||||||| || Sbjct 271306 CCATAGAAACAGCGAGCCTCTGTGACCTGTACTTCCTGGCTGAATCGTTCCACC 271253 >seq1710 Length=997440 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| ||||| ||||| ||||| || ||||| |||||||| || || | || || Sbjct 405047 TCATCTCTGCTAATGAGTTCATTGGAGAAAGTGAGCCCGGGCATCAGTCCTCTTTTCTTG 404988 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||||||||| | || || | ||||| |||||||| ||||| || |||||||| ||| Sbjct 404987 AGCCAAAATATAGCTGCAAAAGCGCCAGAGAAGAAGATCCCTTCAACAGCAGCAAAAGCA 404928 Query 33448 A 33448 | Sbjct 404927 A 404927 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 |||||||||||||||||| || || || | || || || ||||| ||||| |||||| Sbjct 394419 TACTTCTTCCACTGTCCAGAAGGAAGCTTGAGCTTTCTTGTACATTTTCCATATGTCAGG 394360 Query 33861 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 ||| |||||||||||||| ||||||| | ||||||| Sbjct 394359 ATACTGGATTGGGAAAATGACAAATCGACGTGGATTT 394323 Score = 93.3 bits (102), Expect = 5e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||| |||||||||||| ||||| ||||||||||||||||| ||||| | |||| || | Sbjct 395697 CCAGATTTTCATTCACGATTCCATCACTGGCTGCAAAAAATGCCAAGATATGTGAAATGA 395638 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776 |||| ||||| |||||| | || || ||||| Sbjct 395637 AATACTTTTCTTCTGGTTTCAGCTTGTTCCA 395607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 32959 TAAAAGTCAACATCTAAAGAAAAATGATTATC-TTC--TTGAGACATAACTCCCATTTTT 33015 || |||||| ||||||||| ||| |||||| ||| ||||| ||| ||| | | Sbjct 407494 TAGAAGTCAGCATCTAAAGTGAAAACATTATCGTTCGTTTGAGCCATCACTGCAAAGCGC 407435 Query 33016 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33075 ||||| || | || | |||||||| ||||| ||||||||||||| ||| || || ||| Sbjct 407434 TGGTACTCTGCAACCCTCTTTTCGAAGAAATTGGTTTTTCCTTCCAGTGAAATGTTCTCC 407375 Query 33076 ATGAAATCAAACGGATT 33092 ||||| ||||| || || Sbjct 407374 ATGAAGTCAAAGGGGTT 407358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621456020140000