Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4607 116 3e-21 seq7398 114 1e-20 seq12296 95.1 1e-14 >seq4607 Length=116780 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| ||| | |||||| | || || ||| ||| Sbjct 9281 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAAACCATTACCCTGGAGGTGGAGCCCAGT 9340 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| |||||||| ||||| |||||||| || Sbjct 9341 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCCGACCAG 9400 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||||||||| || ||||||| | | | | || || || ||| Sbjct 9401 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAAC 9460 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||| | ||| | | ||||||||||| Sbjct 9461 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCTTGAGAGGAGG 9507 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | |||||| | || || ||| ||| Sbjct 9509 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATTACCTTGGAGGTGGAGCCCAGT 9568 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| |||||||| ||||| ||||| || || Sbjct 9569 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGACCAG 9628 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | ||||||||| || ||||||| | | | | || || || ||| Sbjct 9629 CAGAGACTGATGTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAAC 9688 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||| | ||| | | ||||||||||| Sbjct 9689 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCTTGAGAGGAGG 9735 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | |||||| | || || ||| ||| Sbjct 9737 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATTACCTTGGAGGTGGAGCCCAGT 9796 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| |||||||| ||||| ||||| || || Sbjct 9797 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGACCAG 9856 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | ||||||||| || ||||||| | | | | || || || ||| Sbjct 9857 CAGAGACTGATGTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAAC 9916 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||| | ||| | | ||||||||||| Sbjct 9917 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCTTGAGAGGAGG 9963 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | |||||| | || || ||| ||| Sbjct 8369 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATTACCTTGGAGGTGGAGCCCAGT 8428 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| |||||||| ||||| |||||||| || Sbjct 8429 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCCGACCAG 8488 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||||||||| || ||||||| | | | | || || || ||| Sbjct 8489 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAAC 8548 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||| | ||| | | ||||||||||| Sbjct 8549 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCTTGAGAGGAGG 8595 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | |||||| | || || ||| ||| Sbjct 8825 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATTACCTTGGAGGTGGAGCCCAGT 8884 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| |||||||| ||||| |||||||| || Sbjct 8885 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCCGACCAG 8944 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| || ||||||| | | | | || || || ||| Sbjct 8945 CAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAAC 9004 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||| | ||| | | ||||||||||| Sbjct 9005 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCTTGAGAGGAGG 9051 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | |||||| | || || ||| ||| Sbjct 9053 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATTACCTTGGAGGTGGAGCCCAGT 9112 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| |||||||| ||||| ||||| || || Sbjct 9113 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGACCAG 9172 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | ||||||||| || ||||||| | | | | || || || ||| Sbjct 9173 CAGAGACTGATGTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAAC 9232 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||| | ||| | | ||||| ||||| Sbjct 9233 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCTTGAGGGGAGG 9279 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | |||||| | || || ||| ||| Sbjct 9965 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATTACCTTGGAGGTGGAGCCCAGT 10024 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| |||||||| ||||| |||||||| || Sbjct 10025 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCCGACCAG 10084 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| || ||||||| | | | | || || || ||| Sbjct 10085 CAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAAC 10144 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||| | ||| | | ||||||||||| Sbjct 10145 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCTTGAGAGGAGG 10191 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | |||||| | || || ||| ||| Sbjct 8597 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 8656 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| |||||||| ||||| |||||||| || Sbjct 8657 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCCGACCAG 8716 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| || ||||||| | | | || || || ||| Sbjct 8717 CAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGCCCCCTCTCTGACTACAAC 8776 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||| | ||| | | ||||||||||| Sbjct 8777 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCTTGAGAGGAGG 8823 >seq7398 Length=384992 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || || || || | ||| ||| | |||||| | || || ||| | Sbjct 232192 CAAAATGCAGATCTTCGTGAAGACCTTGAATGGCAAAACCATTACCCTGGAGGTGGAGCC 232133 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||| ||| | || || ||||| |||||||| ||||| ||||| || Sbjct 232132 CAGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGA 232073 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||||||||| | | ||||||||| || ||||||| | | | | || || || Sbjct 232072 CCAGCAGAGACTGATGTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTA 232013 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || || | ||| | ||||| | |||| ||||| Sbjct 232012 CAACATCCAGAAGGAGTCCACCCTCCATCTTGTGTTGCGCCTGAGGGGAGG 231962 >seq12296 Length=1996970 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 |||| ||||| || ||||| || || ||||||| || | |||||| | || | ||| Sbjct 759489 ACAAGATGCAGGTCTTTGTGAAGACCCTAACTGGCAAGACCATTACCTTGGAGGCGGAGC 759430 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 ||| |||||||| ||| | | || || || ||||| || ||||| ||||||| Sbjct 759429 CCAGTGACACCATTGAGAACATGAAGGCCAAAATCCAGGACAAGGAGGGCATTCCTCCCG 759370 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165 |||||||||| ||||| | | |||||||| | ||||| | | | | | || || Sbjct 759369 ATCAACAGAGGCTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACCCTCTCTGACC 759310 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | || || || || ||||| || | ||| | ||||| | |||| ||||| Sbjct 759309 ACAAAATCCAGAAGGAATCGACCCTGCATCTTGTGTTGCGCCTGAGGGGAGG 759258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428932569682500