Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq11950 127 1e-24 seq8471 127 1e-24 seq12422 98.7 7e-16 seq16798 96.9 2e-15 seq14600 89.7 3e-13 seq4990 89.7 3e-13 seq3424 89.7 3e-13 seq12361 86.0 4e-12 seq2782 82.4 5e-11 >seq11950 Length=55752 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 34264 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 34205 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| |||||||||||||||||||| Sbjct 34204 TCATCCATTCATGCTCGTCACTAATTAGATGACGA 34170 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 23818 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGATAGTAGGAAGGGACAGTGGGAATCTCGT 23759 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 23758 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 23724 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| ||||||||||| ||||| || |||||||| Sbjct 28723 AAGCCCGTTCCCTTGGCTGTGGTTTCACTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 28664 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || |||||||||||||||||| Sbjct 28663 TCATCCATTCATGTGCATCACTAATTAGATGACGA 28629 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || ||| |||| Sbjct 44154 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATGTCGT 44095 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| ||||||| |||||||||||||||||||| Sbjct 44094 TCATCTATTCATGCACGTCACTAATTAGATGACGA 44060 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||| ||| ||||| || |||||| | Sbjct 40858 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATACTAGGTAGGGACAGTGGGAATCTCAT 40799 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || || ||| ||||||||||| Sbjct 40798 TCATCCATTCATGTGCATCTCTATTTAGATGACGA 40764 >seq8471 Length=72173 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| |||| || |||||||| Sbjct 20144 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGGAGGGACAGTGGGAATCTCGT 20203 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 20204 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 20238 >seq12422 Length=122834 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 93142 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGACTATCGGTCTCGT 93201 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 93202 GCCGGTATTTAGCCTTA 93218 >seq16798 Length=378709 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | Sbjct 728 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGACTATCGGTCTCGTG 669 Query 20008 GTAATATTTAGCCTTA 20023 |||||||||||| Sbjct 668 CCGGTATTTAGCCTTA 653 >seq14600 Length=559050 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||| || || |||||||||| | Sbjct 23490 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTGCGGTATTTTTTGACTATCGGTCTTGT 23431 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 23430 GCTGCTATTTAGCCTTA 23414 >seq4990 Length=685324 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||| |||||||||||| | |||||||||| ||||| |||| | Sbjct 69196 CTCTCTCTTCAAAGTTCTTCTCAACTTTCCCTTATGGTACTTGTTGACTATCAGTCTTGT 69137 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 69136 GCTGGTATTTAGCCTTA 69120 >seq3424 Length=475262 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || ||||||| |||| ||||||| Sbjct 204477 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACCATACTTGTCGACTATTGGTCTCGT 204536 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 204537 GCTGGTATTTAGCCTTA 204553 >seq12361 Length=312203 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || |||| |||| ||||| ||| || ||| ||||| || || ||||| ||||| Sbjct 239793 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 239734 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || || ||||| || || | || || || | |||| Sbjct 239733 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 239674 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| |||||||| ||| || ||||||||||| | || || | || || Sbjct 239673 ATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 239614 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || || || |||| ||| ||||| || |||||||| || Sbjct 239613 TCCAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATCTT 239564 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| || | ||||| ||||| ||| || ||| ||||| || || ||||| ||||| Sbjct 241846 ACCACCCCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 241787 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || |||| || | || || || ||||| || || | || || || | ||| Sbjct 241786 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 241727 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||| |||||||| ||| || ||||||||||| | || || | || || Sbjct 241726 GATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 241667 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||| ||| || || || ||||||||| Sbjct 241666 CTCCAGGGTTATGGTCTTGCCTGTCAGGGTCTTTACAAAGATCTGCATG 241618 >seq2782 Length=1147223 Score = 82.4 bits (90), Expect = 5e-11 Identities = 63/75 (84%), Gaps = 6/75 (8%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||| ||||||||||||||||| | ||||||||| |||||||||||| Sbjct 907142 CTCTCTCTTCAAAGGTCTTTTCAACTTTCCCTTATGGTACTTGTCGACTATCGGTCTCG- 907200 Query 20007 GGTAATATTTAGCCT 20021 |||||||||| Sbjct 907201 -----TATTTAGCCT 907210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334165464636500