Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq15340 122 2e-22 seq10834 114 2e-20 seq11446 104 4e-17 seq1710 87.8 3e-12 >seq15340 Length=28550 Score = 122 bits (134), Expect = 2e-22 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCT-GGGCCAGCTT 244380 || |||||||||||| ||||||||||||| ||| || |||| | || |||||||| Sbjct 3576 CCTTTGCTGACGGGGGAGCCCTCGTAGGTCTCGTAAGGCCCGT-GTTCTCTGGCCAGCTC 3634 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC- 244439 ||||| | || ||||| |||||||||||||||| |||||| |||||| | | || Sbjct 3635 GCAGCTGGCTTCCAGGGCCCCGTAGTAGATGGTCTCAAAGATCTGCTTGTTGA-GCAGCT 3693 Query 244440 GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 |||||| || || |||| | ||| | |||||| | || || || ||||||| Sbjct 3694 GGGCCTCCGGGCTTTCAAAAGGGAACCTCATGAGGATGAAGGCATCCGCGAGGCCCTGCA 3753 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 | |||||||||||||| | || ||| |||| ||| || Sbjct 3754 CCCCGATGCCGATGGGCCGATGGCGCCTGTTTGAGAGC 3791 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| ||| | ||||||||| || ||||||||||| ||||| ||||| |||||||| Sbjct 8267 ACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTC 8326 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 ||||||| ||| || ||| ||| |||||||| |||||||||||||||| | || | Sbjct 8327 CCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGGGGTC 8386 Query 244826 CCGGTCTCGAGCTGGG 244841 || ||||| ||||| Sbjct 8387 CCCGTCTCCGTCTGGG 8402 Score = 109 bits (120), Expect = 1e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 |||||| || || |||||||||||||| | ||||||||||| || | |||||| ||| Sbjct 12873 CATGAAAAGATCCGGGATCCAGAGGGCGTAGAAGAGGTCCCGGGCACGCTGCTCCTCCTT 12932 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 || ||||| ||| |||| || | || ||||||| ||||| ||||||||||||| ||| Sbjct 12933 CCCGGTGTTTTTCTTCAGGTCGAGGAACTCAAAGATGTCGAAATGCCAGGGCTCCAGGTA 12992 Query 245131 GACAGCGAGGGCGCCGGG 245148 || || | ||| || || Sbjct 12993 GATGGCAAAGGCCCCCGG 13010 >seq10834 Length=8617 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| ||| | ||||||||| || ||||||||||| ||||| ||||| |||||||| Sbjct 5608 ACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTC 5667 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 ||||||| ||| || ||| ||| |||||||| |||||||||||||||| | || | Sbjct 5668 CCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGGGGTC 5727 Query 244826 CCGGTCTCGAGCTGGG 244841 || ||||| ||||| Sbjct 5728 CCCGTCTCCGTCTGGG 5743 >seq11446 Length=7882 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| |||||||| || || || | ||| ||||| ||||||| || ||||| ||| Sbjct 908 ACCTGGAACTCTCCGGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCAATG 849 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| ||||||||| ||||| |||||| |||||||||||| || | | || || Sbjct 848 GACTCGTTGTTGCCCAAGATCTGAGCCGTGGACGCAGTCGGCATCGGGGCGAGGAGGAGG 789 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 |||||||| ||||||||||| Sbjct 788 CTGTTCCTAACGCCGTGCCT 769 >seq1710 Length=997440 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || ||| | || || || || ||||||||||| ||||| || || | || || | Sbjct 404924 TGGTTGCTTTTGCTGCTGTTGAAGGGATCTTCTTCTCTGGCGCTTTTGCAGCTATATTTT 404983 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| | | ||| | ||||||||| ||||| ||||| || |||||||| ||||| Sbjct 404984 GGCTCAAGAAAAGAGGACT-GATGCCCGGGCTCACTTTCTCCAATGAACTCATTAGCAGA 405042 Query 42825 GACGA 42829 || || Sbjct 405043 GATGA 405047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942078688040000