Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq12296 132 1e-25 seq2823 111 4e-19 >seq12296 Length=1996970 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | | || ||||| | ||| ||| || ||||| || ||||| | | Sbjct 759030 CCACCCCTGAGACGCAACACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGGG 759089 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 || ||||| |||||||| || || || || || |||||||| | |||| | ||| Sbjct 759090 AGGGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCCGCTGGTCAGAG--- 759146 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || |||||||||||||| || ||||||||||| || || | || || | || Sbjct 759147 GGGATGCCCTCTTTATCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCC 759206 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 759207 GCCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 759256 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || | ||| | ||| ||||| |||||||| || || || || || || Sbjct 759293 TTCCTTCTGGATTTTGTGGTCAGAGAGGGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAA 759352 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||||||| || || || || || ||||||||||| || |||| ||| Sbjct 759353 GATCAGCCTCTGTTGATCGGGAGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCATGTT 759412 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || | || | || || ||||| || || || ||||| || Sbjct 759413 CTCAATGGTGTCACTGGGCTCCGCCTCCAAGGTAATGGTCTTGCCAGTTAGGGTCTTCAC 759472 Query 288462 GAATATCTGCAT 288473 || | |||||| Sbjct 759473 AAAGACCTGCAT 759484 >seq2823 Length=399890 Score = 111 bits (122), Expect = 4e-19 Identities = 149/209 (71%), Gaps = 14/209 (7%) Strand=Plus/Plus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || || |||| ||| ||||| ||||| || ||||| | |||||||| || ||||| Sbjct 388492 ACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGCGTGCACCCATCTTCC 388551 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | || || ||||| |||||||||||||| |||| ||| |||||||| Sbjct 388552 AGCTGCTTCCCTGCAAAGATCAGACGCTG--------CTGG------TTCCTTATCCTGA 388597 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 ||||| ||||| || || || || | || || | ||| || || || ||||| || ||| Sbjct 388598 ATTTTTGCTTTTACATTCTCAATCGTGTCACTGGGTTCCACCTCAAGGGTGATTGTTTTC 388657 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || || |||||||| Sbjct 388658 CCAGTCAGGGTTTTCACAAAAATCTGCAT 388686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176760007337000