Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq15340 100 3e-16 seq10834 100 3e-16 seq12296 82.4 7e-11 >seq15340 Length=28550 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 |||||||||| | |||| ||| ||||||| ||| ||||||||||| |||||| | || Sbjct 8269 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTCCC 8328 Query 146724 CAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCC 146783 || || | ||||| || | |||||||| ||||||||||||||||||||| ||| Sbjct 8329 CAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGGGGTCCC 8388 Query 146784 GGTTTCGACATTGGTCTCGACGATG 146808 || || | || ||||| |||| Sbjct 8389 CGTCTCCGTCTGGGACTCGATGATG 8413 >seq10834 Length=8617 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 |||||||||| | |||| ||| ||||||| ||| ||||||||||| |||||| | || Sbjct 5610 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTCCC 5669 Query 146724 CAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCC 146783 || || | ||||| || | |||||||| ||||||||||||||||||||| ||| Sbjct 5670 CAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGGGGTCCC 5729 Query 146784 GGTTTCGACATTGGTCTCGACGATG 146808 || || | || ||||| |||| Sbjct 5730 CGTCTCCGTCTGGGACTCGATGATG 5754 >seq12296 Length=1996970 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||||||| | ||| | || || || || || || |||| || | ||||| Sbjct 759270 CGCAACACAAGATGCAGGGTCGATTCCTTCTGGATTTTGTGGTCAGAGAGGGTGCGGCCG 759329 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || ||||| |||||| | ||| ||||||||||| |||||||||||| Sbjct 759330 TCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGAGGAATGCCCTCCTTG 759389 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||| ||| | | || | |||||| | ||| | || | ||| | Sbjct 759390 TCCTGGATTTTGGCCTTCATGTTCTCAATGGTGTCACTGGGCTCCGCCTCCAAGGTAATG 759449 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || || ||||| | |||||| Sbjct 759450 GTCTTGCCAGTTAGGGTCTTCACAAAGACCTGCAT 759484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474362569960000