Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq15190 149 9e-31 seq11181 123 4e-23 >seq15190 Length=331036 Score = 149 bits (164), Expect = 9e-31 Identities = 208/289 (72%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || || || |||||||||||| || ||||| | | || || || || || ||| Sbjct 86168 AAAGGGCAGCCCTTCACATTGTTGCAGATGAGATTTCGGAGGGAGGCTGTGTTAACTATG 86227 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 || || || || | || ||||| || || || |||||||| | || ||||||||| | Sbjct 86228 TCAAAGCCAACTTTGCCCCCGAAAGTACTTGGCTTCCAGTATTCAGGCGAGCAGATGGCA 86287 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || ||||||| |||||||||||||| || ||||| || || || ||| ||||||| ||| Sbjct 86288 TTACCCATGAGGCCTTTCAAGGAAAATGGTGCCCCAAGTTCTATCATGGTCTCACCAAAG 86347 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGAGTTCGACAGCCTCGAC 9129 |||||||| || || || ||||| || | |||| | | ||| || || | || || | Sbjct 86348 ATGGCACCTGGGCGTGGCTTTTCAAC-AAGAAGTGCTGGGTACAGCTCCATCGCATCAAT 86406 Query 9130 GTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 ||| ||||| || |||| | || ||||| || || || || ||| || Sbjct 86407 GTCTCCATAAAGCTCTTCAAGTTCTGCAGCCATTTCTTTTTCTCCTGCA 86455 Score = 100 bits (110), Expect = 4e-16 Identities = 114/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | ||| || ||||||||| | | || ||||| ||||||| ||||| Sbjct 91607 ACCTTTTACACCCATAGGTGTTGGGCAGTCATGGGCTACTGGAGGGAGAGTTCGAGTATA 91666 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAAT--CTAAGTTGTAGAGC 10506 ||||| ||||||||| | ||||||||||| |||||| |||||| ||| || || Sbjct 91667 GTAGGAGAGATTCGAATACGCTTCCCAGCTTTTGTAGGCATAATGGCTA--TTATATGTT 91724 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCTA 10537 || || || ||||| | | |||||| |||| Sbjct 91725 GGTGGGCTCTCAATTAAATGGGACCTTGCTA 91755 >seq11181 Length=1903394 Score = 123 bits (136), Expect = 4e-23 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 ||| || ||||| || || || || | | || || || || ||||| ||||||||| | Sbjct 1354504 TGCTGTGTTCACCATCTCAAAGCCAGTGGCACCACCAAATGTACTGGGCTTCCAGTACTC 1354563 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || ||||||||| ||| ||| ||||||||||||||| || || ||||| | || | Sbjct 1354564 AGGAGAGCAGATGGGATTCCCCAAGAGCCCTTTCAAGGAGAAGGGGGCCCCAATTTCCAC 1354623 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||||| || || || |||||| ||| || || || || | ||||||| ||||| Sbjct 1354624 CATGCTTTCTCCAAAAATGGCATTGGGCTGCCTCTTCTCCACCAGCAAGCCAGGGTAGAA 1354683 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 ||| | || || | ||| || || | |||||| ||| || || ||||||| ||| || Sbjct 1354684 TTCCATGGCATCAATGTCTCCGTACACCTCTTCCAGCTCAGCTGCCATCTCCTCCTCCCC 1354743 Query 9175 T 9175 | Sbjct 1354744 T 1354744 Score = 93.3 bits (102), Expect = 6e-14 Identities = 163/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 ||||| || |||| |||||| ||| |||| |||||||| | || || | || ||| Sbjct 1357467 GTGGTCTGGAACAGCTGCTCATCATCCCAGGTTGGGTGTTCCTTCTTCAGTATGTCACAG 1357526 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || | |||||| || | |||||| ||||||||||||||||| | || || | | ||| Sbjct 1357527 ACGCGGTTGTGCTCCCGCAGCCAGATGGTGGCGTACATCATGAGGCCTGGTAGGAGGCCA 1357586 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCA----CTTCGGGCGCATACAG 9911 || || || | ||||| |||| |||| | || ||| | ||| || ||| | Sbjct 1357587 AAGACCTCTTGGCCCACAGCAAGGCGCTGCTCCAGGGGGATGTGCTTTGG----ATAGAT 1357642 Query 9912 CATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 ||| ||||| | | || || || || |||||||| || |||| ||| | ||| Sbjct 1357643 CATGTGCACTGGAGCTTCCAGCACCGTAGGTGGATACATCTCCCCGTTAATCATCTG 1357699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721995576100000