Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2856 113 3e-19 seq4478 89.7 4e-12 >seq2856 Length=189717 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| | |||||| |||| ||||||||||||||| |||||||| || | | ||| Sbjct 8315 TTTTTATCCAAACCATAAGCAATAGCAGCAGCAGTTGGCTCATTAATGATCCGGAGCACA 8374 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 8375 TTGAGACCAGCAATGGTTCCGGCATCTTTTGTAGCCTGGCGCTGGGAGTCATTGAAATAA 8434 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || |||| || |||| Sbjct 8435 GCTGGGACGGTAACCACTGCAT 8456 >seq4478 Length=1549178 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAA- 635499 |||||| | ||||| || |||||||| ||||| ||| | || ||| | ||||| |||| Sbjct 878172 TGTACCTTGATTTTAACTGAGGGAGACTCAGCCAAATCTTTAGCTGTCTCTGG-CTTAGG 878230 Query 635500 TGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAG 635559 ||| ||||||||||| || || ||||||||||| || || ||| || | |||||| | Sbjct 878231 TGTCATTGGAAGAGACAGATACGGGGTTTTCCCACTCAGGGGTAAAATTCTTAATGTTCG 878290 Query 635560 GGATGC 635565 ||| || Sbjct 878291 GGAAGC 878296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3771319539199000