Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq15340 104 3e-17 seq10834 104 3e-17 >seq15340 Length=28550 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 ||| ||||| |||||||| | || || || |||| |||| | || || ||||| Sbjct 8269 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTCCC 8328 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| |||||| | ||||||||||||||||| || ||||| Sbjct 8329 CAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGGGGTCCC 8388 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 |||||||||||| |||| || || || | ||||| Sbjct 8389 CGTCTCCGTCTGGGACTCGATGATGGCGTACCACA 8423 >seq10834 Length=8617 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 ||| ||||| |||||||| | || || || |||| |||| | || || ||||| Sbjct 5610 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTCCC 5669 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| |||||| | ||||||||||||||||| || ||||| Sbjct 5670 CAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGGGGTCCC 5729 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 |||||||||||| |||| || || || | ||||| Sbjct 5730 CGTCTCCGTCTGGGACTCGATGATGGCGTACCACA 5764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588568533460000