Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2856 122 7e-22 seq20634 105 5e-17 >seq2856 Length=189717 Score = 122 bits (134), Expect = 7e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 |||||| ||||||| | || || ||||| ||||| |||||||| || || || ||||| Sbjct 8463 GTTACGAATGCAGTGGTTACCGTCCCAGCTTATTTCAATGACTCCCAGCGCCAGGCTACA 8404 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||| ||| |||||||| || ||||| || || || || ||||| || |||||| Sbjct 8403 AAAGATGCCGGAACCATTGCTGGTCTCAATGTGCTCCGGATCATTAATGAGCCAACTGCT 8344 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| |||| ||||| | |||||| Sbjct 8343 GCTGCTATTGCTTATGGTTTGGATAAA 8317 Score = 105 bits (116), Expect = 5e-17 Identities = 164/231 (71%), Gaps = 10/231 (4%) Strand=Plus/Minus Query 549923 AATAA--AAATTAAATAATTTAAAGATATGAATCTTATATTTTGACATAAGATATAATGT 549980 ||||| ||||| | |||||| || || ||||| ||| || || | || ||||| Sbjct 9561 AATAACTAAATTGACTAATTTTAA---AT--ATCTTTTATGTTTGCA---GCTACAATGT 9510 Query 549981 CAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGC 550040 | || | | || | || || ||| | || ||||||||| ||||||||||| | | Sbjct 9509 CTAAGGGACCATCTGTTGGGATTGATCTTGGCACCACATATTCCTGTGTTGGTGTCTTCC 9450 Query 550041 AAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATG 550100 || |||| ||||| ||||| ||||||||||| || ||||||||||| || ||| || | Sbjct 9449 AACATGGCAAAGTGGAAATCATTGCCAATGACCAGGGTAACAGAACCACACCAAGCTACG 9390 Query 550101 TTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151 || | ||||| || || ||| | | |||||||| ||||| | |||| Sbjct 9389 TTGCCTTCACCGATACCGAAAGGCTTATCGGTGATGCCGCAAAGAACCAAG 9339 >seq20634 Length=1273 Score = 105 bits (116), Expect = 5e-17 Identities = 164/231 (71%), Gaps = 10/231 (4%) Strand=Plus/Plus Query 549923 AATAA--AAATTAAATAATTTAAAGATATGAATCTTATATTTTGACATAAGATATAATGT 549980 ||||| ||||| | |||||| || || ||||| ||| || || | || ||||| Sbjct 342 AATAACTAAATTGACTAATTTTAA---AT--ATCTTTTATGTTTGCA---GCTACAATGT 393 Query 549981 CAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGC 550040 | || | | || | || || ||| | || ||||||||| ||||||||||| | | Sbjct 394 CTAAGGGACCATCTGTTGGGATTGATCTTGGCACCACATATTCCTGTGTTGGTGTCTTCC 453 Query 550041 AAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATG 550100 || |||| ||||| ||||| ||||||||||| || ||||||||||| || ||| || | Sbjct 454 AACATGGCAAAGTGGAAATCATTGCCAATGACCAGGGTAACAGAACCACACCAAGCTACG 513 Query 550101 TTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151 || | ||||| || || ||| | | |||||||| ||||| | |||| Sbjct 514 TTGCCTTCACCGATACCGAAAGGCTTATCGGTGATGCCGCAAAGAACCAAG 564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4019168616335000