Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq9463 152 1e-31 seq15340 127 4e-24 seq12962 127 4e-24 seq10834 127 4e-24 seq14563 120 6e-22 seq11446 87.8 3e-12 >seq9463 Length=2497706 Score = 152 bits (168), Expect = 1e-31 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | | || ||| || ||| | ||| || || || ||||||||||||| Sbjct 1225958 GCTGGCAGCCGTTGTTCACGTGGTTCATGACTTTCTGCTTCAGCTGCGCCACCTGGTCCC 1225899 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || || || || ||||| ||||| ||||| || ||| | |||||| |||| Sbjct 1225898 GGAGCGCGCTGGCCGTGTTGGAGAGTCCCGCGTTCTCGCTCTTCAAGGTCTTCACCTTCT 1225839 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||||||| |||||||| ||||| || | | ||||| |||||||| |||| |||| Sbjct 1225838 CCTCCAGCCGAGCGATGCGCTCCAGCTTCCTCTTCCGGCACTTGGTGGCGGCCAGACGGT 1225779 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || || | ||| | ||| |||||||||| |||||||| ||||||| || || ||| Sbjct 1225778 TGCGTAGCCGCTTCCTCTCCACCTTGATGCGCTCCTGGTCTTCCATGTTAATGGGCGAC 1225720 >seq15340 Length=28550 Score = 127 bits (140), Expect = 4e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 213140 GCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTC 213199 ||||||||| |||||| ||||| ||| | ||| || || || || |||||||||| Sbjct 3575 GCCTTTGCTGACGGGGGAGCCCTCGTAGGTCTCGTAAGGCCCGTGTTCTCTGGCCAGCTC 3634 Query 213200 GCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTT 213259 |||| || | |||||| ||||||||||||| ||||| |||| | |||||||| || Sbjct 3635 GCAGCTGGCTTCCAGGGCCCCGTAGTAGATGGTCTCAAAGATCTGCTTGTTGAGCAGCTG 3694 Query 213260 GGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGAC 213319 |||||| ||| || || | | ||||| | ||| |||| || || ||||| || Sbjct 3695 GGCCTCCGGGCTTTCAAAAGGGAACCTCATGAGGATGAAGGCATCCGCGAGGCCCTGCAC 3754 Query 213320 CCCGATGCCGATGGG 213334 ||||||||||||||| Sbjct 3755 CCCGATGCCGATGGG 3769 Score = 127 bits (140), Expect = 4e-24 Identities = 102/123 (83%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| ||| Sbjct 8282 GTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGG 8341 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || ||||||||||||||||| |||| ||| ||||| |||| Sbjct 8342 TTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGGGGTCCCCGTCTCCGTCTGG 8401 Query 213648 GAC 213650 ||| Sbjct 8402 GAC 8404 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| || ||||||| ||| || ||| ||| ||||||| || | | ||| ||| Sbjct 12873 CATGAAAAGATCCGGGATCCAGAGGGCGTAGAAGAGGTCCCGGGCACGCTGCTCCTCCTT 12932 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || | |||||| ||| || || || ||||||||||| ||||| ||||||| ||| Sbjct 12933 CCCGGTGTTTTTCTTCAGGTCGAGGAACTCAAAGATGTCGAAATGCCAGGGCTCCAGGTA 12992 Query 213941 GATGGCAAAGGCGCCCGGCCTCTTGC 213966 |||||||||||| ||||| |||| || Sbjct 12993 GATGGCAAAGGCCCCCGGTCTCTGGC 13018 >seq12962 Length=108521 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| || |||||||| || || || | | || || || || Sbjct 17622 AGCACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGGAGCAGGTTGGCCGTCGAGGCGAGC 17563 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| ||| || |||||||| || |||| |||||| ||||| Sbjct 17562 TCGGTGTTCTGGCTCTTGAGGCTCTTGACCTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 17503 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || ||||||||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 17502 TTCCGCCGGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 17443 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 17442 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 17410 >seq10834 Length=8617 Score = 127 bits (140), Expect = 4e-24 Identities = 102/123 (83%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| ||| Sbjct 5623 GTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGG 5682 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || ||||||||||||||||| |||| ||| ||||| |||| Sbjct 5683 TTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGGGGTCCCCGTCTCCGTCTGG 5742 Query 213648 GAC 213650 ||| Sbjct 5743 GAC 5745 >seq14563 Length=2489596 Score = 120 bits (132), Expect = 6e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 241439 ACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACC 241498 |||||| | ||||| | | ||||| || ||| | ||||| | |||||| || Sbjct 1501587 ACCTGGGCGCGCAGGAGGCTGGCGGTGGCGGCCAGCTCGGCGTTCTGCCCTTTGAGCGCC 1501528 Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 || |||||||||||||| || |||||||| ||||| |||||||||||||| |||| ||| Sbjct 1501527 TTGACTTTCTCCTCCAGGCGGGCGATGCGCTCCAGCTTGCGCCGGCGGCACTTGGAGGCG 1501468 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||| || || ||||| || || || || | ||| |||||| ||| ||| Sbjct 1501467 GCGATGCGGTTGCGCAGCCTCTTGCGCTCGGCTTTCAGGCGCTCCTGGCTCTCGGCGTCC 1501408 Query 241619 ATCGGAGAC 241627 | ||| ||| Sbjct 1501407 AGCGGGGAC 1501399 >seq11446 Length=7882 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA-T 212754 |||||||||||| |||||||| ||||| | | | ||| |||||||| | | | | Sbjct 6595 GTTCAGGGACTGGCTCTGGTCGATGAAAGCCCCTCGGTCCGCGGCCATCTTGAGCACGGT 6536 Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGG 212814 || ||||||||| |||||| ||||||||| ||| | || ||||||||||| | ||| Sbjct 6535 CT-TCTGGGAGATCTCCCAGACGGTCTTGTAGAGCTGCTTCAGGTCCTCTGGAATCTCGG 6477 Query 212815 GGATGTTCTG 212824 | |||||||| Sbjct 6476 GAATGTTCTG 6467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929302943360000