Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq15340 100 5e-16 seq10834 95.1 2e-14 >seq15340 Length=28550 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 |||||| || ||||||||||| || || | ||||| || | || |||||||||||| Sbjct 12873 CATGAAAAGATCCGGGATCCAGAGGGCGTAGAAGAGGTCCCGGGCACGCTGCTCCTCCTT 12932 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 ||| |||||||| |||| || | |||||||| ||||| ||||| |||||||| || Sbjct 12933 CCCGGTGTTTTTCTTCAGGTCGAGGAACTCAAAGATGTCGAAATGCCAGGGCTCCAGGTA 12992 Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182 || ||| | || || |||| || Sbjct 12993 GATGGCAAAGGCCCCCGGTCTCT 13015 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 |||||||||||| |||| |||| | |||||| || || ||||||||||| ||||||||| Sbjct 8267 ACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTC 8326 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 ||||||| | || || ||| || ||| | ||||||||||||||| Sbjct 8327 CCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCAT 8376 >seq10834 Length=8617 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 |||||||||||| |||| |||| | |||||| || || ||||||||||| ||||||||| Sbjct 5608 ACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTC 5667 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 ||||||| | || || ||| || ||| | ||||||||||||||| Sbjct 5668 CCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCAT 5717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926621377760000