Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2856 113 3e-19 seq20634 93.3 3e-13 >seq2856 Length=189717 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| |||| || ||||| ||||| ||||| || || || || || || ||||||| Sbjct 8456 ATGCAGTGGTTACCGTCCCAGCTTATTTCAATGACTCCCAGCGCCAGGCTACAAAAGATG 8397 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| ||||| ||||| | || || |||||||| ||||| || || || Sbjct 8396 CCGGAACCATTGCTGGTCTCAATGTGCTCCGGATCATTAATGAGCCAACTGCTGCTGCTA 8337 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 ||||||||||| | ||||| || Sbjct 8336 TTGCTTATGGTTTGGATAAAAA 8315 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| |||||| | || || || || ||||| | ||| | ||| |||| ||||| | Sbjct 9494 TTGGGATTGATCTTGGCACCACATATTCCTGTGTTGGTGTCTTCCAACATGGCAAAGTGG 9435 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| |||||||||||||| ||||| ||||| |||||| || ||| | || || || | Sbjct 9434 AAATCATTGCCAATGACCAGGGTAACAGAACCACACCAAGCTACGTTGCCTTCACCGATA 9375 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 | ||| ||||| || ||||| || || | |||| Sbjct 9374 CCGAAAGGCTTATCGGTGATGCCGCAAAGAACCAAG 9339 >seq20634 Length=1273 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| |||||| | || || || || ||||| | ||| | ||| |||| ||||| | Sbjct 409 TTGGGATTGATCTTGGCACCACATATTCCTGTGTTGGTGTCTTCCAACATGGCAAAGTGG 468 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| |||||||||||||| ||||| ||||| |||||| || ||| | || || || | Sbjct 469 AAATCATTGCCAATGACCAGGGTAACAGAACCACACCAAGCTACGTTGCCTTCACCGATA 528 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 | ||| ||||| || ||||| || || | |||| Sbjct 529 CCGAAAGGCTTATCGGTGATGCCGCAAAGAACCAAG 564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3259964835842000