Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq4964 174 2e-38 seq1775 105 8e-18 >seq4964 Length=1309311 Score = 174 bits (192), Expect = 2e-38 Identities = 634/984 (64%), Gaps = 15/984 (2%) Strand=Plus/Plus Query 160055 ATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGCGAA 160114 || ||| |||| || ||||| ||||| |||| ||| ||| || || || || || Sbjct 700859 ATATTCTTCCAAGCACTGGACTGCGAAGGGATCAATGTCAGTGTCAAACTTGTTGGCAAA 700918 Query 160115 CAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGA 160174 | ||||| || || | ||||||| || |||||| || || || || || || Sbjct 700919 AAAGTGGTGT---TTTTGCAACATCCAGTTCAAGTCTCCAACTCCAAAGACACACACAGA 700975 Query 160175 ACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTA 160234 ||| | || || || || || || || || | || || || | |||||| || || | Sbjct 700976 ACGGACATGAACCCCATTACAGGGTGGATATGGGGCACCCTTGGACACGTCCCCCTCAAA 701035 Query 160235 GTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACAT 160294 ||| |||||||| ||||| ||||| | || | ||| || ||| |||||||||| || Sbjct 701036 GTAATGCCACTTGACAAATCTGGCAAGAGCATTCATATCAGAGACATCGTATTTGT-CAC 701094 Query 160295 CAGGGGAA-CGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGT 160353 || ||| | ||||| || || | || || || || | || ||||||| || || | Sbjct 701095 TAGCAGAAACAGCACCTGGCACTTCAGGGATTCGTTGAATAGTAGCCCACAAGTACTCAT 701154 Query 160354 CGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCC-CGCAGA 160412 | || ||||| ||||| |||| ||| || || || |||| |||| | ||| Sbjct 701155 CAGGACTGTAAGTGTCTTTAGCCCACTCTATAAAAGAAAGGATTTTGCTGTTTTCTAAGA 701214 Query 160413 ---ACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGT 160469 || || ||| | || | || |||||||| || ||||| ||||| || ||| Sbjct 701215 CATACTCGACAAACCTC----CTACTTACAACAAAGTAGGCACTGCCAGAGAAAATGGGT 701270 Query 160470 ATGGGTATAGGCGGCGTGTC-TTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | ||||| || |||| |||||| || | || || || | || | Sbjct 701271 GTACTGATAGGTGG-GTGTTGTTTGTCTATTCCCATATTCTTTACTTTACCGTCAACAAT 701329 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588 | | |||||||||||| | | ||||| | ||||| || || || | || Sbjct 701330 TTCATAATGCTTCTTCCACCGTATCTCCTTGTATGAAGGCATTTTCTCGGTTTCCAAGCT 701389 Query 160589 GTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648 ||| |||| | ||| | |||||| | || | || || |||| ||||||| || || Sbjct 701390 GTTTTCACCCTTGAGAGCTTTCAGTTTCTCTGCTATTTCCTGGTTGGTCTTGATTGGGAA 701449 Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708 || |||| || | ||| |||| |||||||| | | ||| || ||||| | Sbjct 701450 ATCCATACCACAAAGGTTGATCAAATACTTCCAGCTTGTACTCCTCCTGTAGAGGTCTTT 701509 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| || | ||||| ||||| | |||||| ||||| |||||||| |||| || | Sbjct 701510 CATGCAGTTGAGGTCTGCTTGCACTCTGCTCCACGAAGCATACACTACACTCTCCAGCTG 701569 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACAT 160828 || || | ||||| || || ||||| || | || ||| |||||| ||||| Sbjct 701570 GCTCGCAATGAAGACATTGTCAAAACATGAAGCAATCCCCTTCACCGCAGCCAAGAAGGA 701629 Query 160829 CTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCT 160888 | | ||| ||||| || | ||| || ||| || || || || | | || Sbjct 701630 TTCTGGGGACTTCTTATCCACATGAATGCAGTAATAGTTTTGGGGTGCATATACAGATCT 701689 Query 160889 GAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 || | || || ||||| | || || |||| | ||| || ||||| || | ||||| Sbjct 701690 CAGAAGTCTATCAAACATATTAATTTTGTGATAAACCACTATTGAGTATGCAAGTGGAAA 701749 Query 160949 CTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATC 161008 || | || || ||||| | | | | || || ||| |||| |||||| | | Sbjct 701750 TTCTGCTTCTTCTTTGCTCAGAGGTTCCATAATATATTTCCGCTTCTTTATAAAAGAGGC 701809 Query 161009 ACAATCCCGCGTCATGTTGATATA 161032 |||||| |||||||| ||||| Sbjct 701810 ACAATCAGTTGTCATGTTAATATA 701833 >seq1775 Length=229576 Score = 105 bits (116), Expect = 8e-18 Identities = 177/256 (69%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 160134 AGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTG 160193 || |||||||| | ||| || | ||| | | ||| || | || | || || || Sbjct 41436 AGCATCCAGTGGAGGTCACCCGCTCCGTAGATGCACACCGCCCGCCGGGAGACACCCGTG 41495 Query 160194 CAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAAC 160253 ||||| ||||| |||| ||||| || || || || |||| ||||||||||| | Sbjct 41496 CAAGGGGGGTATGGAGCCCCTTTGTGGACATCCCCCTCTAAGTAAGACCACTTCACAACC 41555 Query 160254 CTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGA 160313 || || || || | |||||| | | ||| ||||| | | ||| | || || || Sbjct 41556 CTTGCAATGGCGTTCATGTCCGTGAGGTCATATTTATCGTTGCTGGGCATGGATCCTGGC 41615 Query 160314 ACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTA 160373 || |||||||| || || || |||||||| || |||||||| || ||||| |||||||| Sbjct 41616 ACTCCGGGCATCCGATGCAGAGTGGCCCAGAGATGTTCGTCTGGACTGTAAGTGTCCTTG 41675 Query 160374 GACCATTCCATGAACT 160389 ||| || | ||||| Sbjct 41676 TTCCACTCTAGGAACT 41691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575837481540000