Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2856 113 3e-19 seq4478 91.5 1e-12 >seq2856 Length=189717 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| | |||||| |||| ||||||||||||||| |||||||| || | | ||| Sbjct 8315 TTTTTATCCAAACCATAAGCAATAGCAGCAGCAGTTGGCTCATTAATGATCCGGAGCACA 8374 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 8375 TTGAGACCAGCAATGGTTCCGGCATCTTTTGTAGCCTGGCGCTGGGAGTCATTGAAATAA 8434 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || |||| || |||| Sbjct 8435 GCTGGGACGGTAACCACTGCAT 8456 >seq4478 Length=1549178 Score = 91.5 bits (100), Expect = 1e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 |||||| | ||||| || |||||||| ||||| ||| | || ||| | |||||| | | Sbjct 878172 TGTACCTTGATTTTAACTGAGGGAGACTCAGCCAAATCTTTAGCTGTCTCTGGCTTAGGT 878231 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || ||||||||||| || || ||||||||||| || || ||| || | |||||| || Sbjct 878232 GTCATTGGAAGAGACAGATACGGGGTTTTCCCACTCAGGGGTAAAATTCTTAATGTTCGG 878291 Query 400417 GATGC 400421 || || Sbjct 878292 GAAGC 878296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3731228559279000