Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1216 116 7e-21 seq15771 86.0 1e-11 >seq1216 Length=204033 Score = 116 bits (128), Expect = 7e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || || |||||||||| ||||| ||||| || || || | || ||||| |||||||| Sbjct 104050 GCTTTGTGGTGGTACTTCATATCAAAAGGAATTGAGTATCTGGACACAGTATTTTTCATC 103991 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || || || |||||||| || | || || || || || ||||| ||||| ||||||||| Sbjct 103990 CTAAGAAAGAAGTTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTTCACTATGTTT 103931 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 || || | ||| | || || || ||| |||||||||| ||| Sbjct 103930 ACCTTGTGGTGGATTGGCATAAAGTGGGTTGCAGGAGGGCAG 103889 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 58671 TACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTTTC 58730 ||||||||||| | |||| || || || ||| | || |||||||| ||||| || |||| Sbjct 95861 TACAATTCCATGTGACTATTGGCCACACAGCTTTTTCTATTTACATTGATTGTCCTTTTC 95802 Query 58731 CAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGGTA 58790 | ||||||| ||| ||| || || ||||| ||| ||||||| | | ||||||| Sbjct 95801 CTAAATGGATGCATTGGAGTGTCATTTTCTATGCTACCTCTTTTATTATCCTTTTTGGTA 95742 Query 58791 ACTTCTATTTTAGAACATACAAGA 58814 ||||||| | | | |||||||||| Sbjct 95741 ACTTCTACTATCGGACATACAAGA 95718 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 || ||||| || ||||| | || ||||||||||||||||| ||||||| |||||||| Sbjct 98398 GCTTTTTTTGGAGCTCAAATTAACTCTTTTATCCATGTTATAATGTATATGTATTATGGA 98339 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | | ||| | ||||| | |||||||| || ||||| || || Sbjct 98338 TTAGCTGCCTGTGGCCCAAAATTTCACAAGTACCTTTGGTGGAAACGCTACCTGACCATT 98279 Query 58661 ATGCAATTGGTA 58672 ||||| ||||| Sbjct 98278 ATGCAGCTGGTA 98267 >seq15771 Length=129986 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 183055 GAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 183114 ||||| || |||||| | ||| |||| ||||||||||| || ||||| || || ||||| Sbjct 47698 GAAGGGAAGATGCATGGGTTTCTACGGATGTACTGGGCCAAGAAGATCCTGGAGTGGACC 47757 Query 183115 AGAACTCCGGAAGATGCTTTGAGTTATAGTATCTATATGAACAATAAGTACGAACTAGAC 183174 || | || ||||| || |||| | || |||||| | ||| || ||||| | || Sbjct 47758 AGCTCCCCTGAAGAGGCCTTGAAATTCAGCATCTATCTCAACGATCGCTACGAGTTGGAT 47817 Query 183175 GGTACGGATCCTAACGGATACGTAGGT 183201 || | ||| || ||||| || || ||| Sbjct 47818 GGCAGGGACCCCAACGGCTATGTGGGT 47844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901248659440000