Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq14590 163 3e-35 seq1775 127 2e-24 seq4964 113 5e-20 >seq14590 Length=735592 Score = 163 bits (180), Expect = 3e-35 Identities = 380/568 (67%), Gaps = 19/568 (3%) Strand=Plus/Minus Query 176975 CACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAG 177034 ||| || ||||||| ||| | |||| ||||||||| || || ||||| | | || || Sbjct 352208 CACATGTATGAAAGAATCTGCTGGGATGTAATTTTCATAGTTTTCTCTTGGAGGACCCAG 352149 Query 177035 TACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCT 177094 ||| || || || | || ||||||| || ||| ||||| || ||||| ||||| | Sbjct 352148 TACAATTGGCACAGACCCAGCCATAAAAGCATTGTAAAGTTTCTCTGTAATGTAGTCTTT 352089 Query 177095 GTGTACGGAGTTCTCAAACGCGAGATAGAATTTACA---GGAAGATAGTAGCGGGATGAA 177151 ||| | || |||||||| | || ||||| ||||| |||| ||||| | |||| || Sbjct 352088 GTGGATAGAATTCTCAAATGAAAGGTAGAACTTACATGTGGAA-ATAGTTG--GGATCAA 352032 Query 177152 GTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTT 177211 || | ||| | ||||||||| | | | | |||||| ||| || || | || ||| Sbjct 352031 GTTTTTATCACTCACATAATCTCCAAATGCTTGCCCGTAGGTATGGATTTCAAGGTATTT 351972 Query 177212 ACTGAGCTCTAGGTAGTATCTCGATCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCA 177271 ||| | ||| ||| || | || | || || |||||| ||||| || ||||| Sbjct 351971 ACTTAACTCATTGTAATACTTAACCCTAGCATGCTCAGGGTTCCAGTTGCTCACCACCCA 351912 Query 177272 GCAAACTAACTTGCTCTTTGCGGGAACGGGATTCGATACTAATGCAGTGTCT-CTGAGCG 177330 || || ||| | ||| || || ||| | || | || | | || | | Sbjct 351911 ACACACCAACCTCTCCTTATTCGGTAC----TTCAAACAGAAAGGAGCTTGTGCTAACCA 351856 Query 177331 TTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGA 177390 | | | ||||| ||||| |||||||| || || || | || || | || ||||||| Sbjct 351855 TCATGAAGCCATAAGGCACTTGAATATCTGAATCACGCCGATAAGTGAGGGTCAGATTGA 351796 Query 177391 AAAGGTTTTCTATACC----TTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATC 177446 | || | ||| || || || | || || | |||| || ||||||||||||||| Sbjct 351795 ACAGATGTTCGATTCCACTCTTTTGTGGAGTGTGTGTT----GGAGATTCTAAGTTCATC 351740 Query 177447 CATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTT 177506 || |||||||| ||||| | ||| || |||| | ||||| | || |||| || Sbjct 351739 CAGATCCACTTCTGAAATGGTGGCCTAGGTTGCTGAGGTAAATTAGTTAGATCCCAGCTG 351680 Query 177507 ATCTCTCTGTGGTGAAAGACTACGGCAT 177534 || |||||||| |||| | ||| |||| Sbjct 351679 ATGTCTCTGTGATGAATAAGTACAGCAT 351652 >seq1775 Length=229576 Score = 127 bits (140), Expect = 2e-24 Identities = 562/875 (64%), Gaps = 26/875 (3%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGC-GAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||| || ||||| || | ||||||||| ||| | ||||| | || || |||| Sbjct 41402 ATCAAATTTGTTGGCTAGGAGGTGATGCTGAGAG----AGCATCCAGTGGAGGTCACCCG 41457 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||| | | |||||| | |||| | || || |||| || || || | ||||| | Sbjct 41458 CTCCGTAGATGCACACCGCCCGCCGGGAGACACCCGTGCAAGGGGGGTATGGAGCCCCTT 41517 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 || ||||||||||| |||| |||||| || | ||| | || || | |||||| | Sbjct 41518 TGTGGACATCCCCCTCTAAGTAAGACCACTTCACAACCCTTGCAATGGCGTTCATGTCCG 41577 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | ||| || || | | || || || || ||| || || || |||| | || ||| Sbjct 41578 TGAGGTCATATTTAT-CGTTGCTGGGCATGGATCCTGGCACTCCGGGCATCCGATGCAGA 41636 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || |||||||||||||| || || ||||| |||||| | ||||| | Sbjct 41637 GTGGCCCAGAGATGTTCGTCTGGACTGTAAGTGTCCTTGTTCCACTCTAGGAACTGTTTC 41696 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 |||||| || | | || || ||| | ||| || || | | || || | Sbjct 41697 ACCGTTGGGTCTTTGAAAAGGTGTTGAACGAACTCCCTTGTGACCACGATATAAGCATTG 41756 Query 162478 CCAGAAAACA-CGGGTATGCGTATAGGAGGGGGCTCTT---TGTCTTGACCCGTGTTGAC 162533 || | |||| ||| || | | | |||||||||| || | | ||| ||| Sbjct 41757 CCGGTGAACATGGGGGATCCATGCGGAGGGGGGCTCTTCACGGTATCGGTCCG---AGAC 41813 Query 162534 TACCATTCCCTCTACGACCACGTGTCTCTTCCTCCA-CCTGGCCATCTTACTGGTAGACG 162592 | ||| || || |||| | |||| | | | | ||| || ||||| Sbjct 41814 ACGGAATCCTTC----ACTTCGTGGTGGTATTTCCAGCGTTGTGCT-TTAGCGGAAGACG 41868 Query 162593 GGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGC--ACCATCTC 162650 | || | || | | |||| | ||| || ||||| ||||| || ||||| Sbjct 41869 GTCTCTCTGATTCCATATTGTTCTGTTGGTTCAATGCTTTCAG--GACGCGGACGATCTC 41926 Query 162651 TAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAAC 162710 |||||||| | ||| || ||||| || ||| || | | || ||||||| ||| Sbjct 41927 CGCGTTGGTCTTGATGGGGAAATCGGTCCCACAGGTGTTCAGGAGGTACTTCCACTGAAC 41986 Query 162711 GCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACG 162769 || || | || || | | |||||||| ||||| || || | |||||| | Sbjct 41987 TTTG-CTCTTCAGGAGGTCTTCCATGCAGTTCAGGTCGGCTTGAACCCTGGACCACGAGG 42045 Query 162770 CGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCC 162829 | ||||| || |||| | ||| ||||||||||||||||| || || || | || | Sbjct 42046 CATACACCACTGATTCCAGCTTAGATGCGACAAAGACATTGTCAAAGCAGGAGGCAATGC 42105 Query 162830 CCATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 | ||| ||| | ||| | | ||| |||||||| | |||||| || Sbjct 42106 CTCGCACCGCCTCTTTGAAAGGTTTGGAGGACTTCTCGTCTACGTGGATGCAGTAGGCAT 42165 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 |||||||||||||||||| || || || |||| ||||| || |||| || ||| | || Sbjct 42166 TCTGAGGGGCGTAGATGGACCGCAACAACTTCTCAAACATTTCGATCTGATTGTGGATCA 42225 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTCG 162984 | || ||||| || |||||||| || | |||||| Sbjct 42226 CCATGGAATAAGCAATGGGGAAGTCTTCTTCCTCG 42260 >seq4964 Length=1309311 Score = 113 bits (124), Expect = 5e-20 Identities = 600/942 (64%), Gaps = 25/942 (3%) Strand=Plus/Plus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || |||||||| || || | ||| || || | ||| ||||| || | || || | Sbjct 700902 TCAAACTTGTTGGCAAAAAAGTGGTGT---TTTTGCAACATCCAGTTCAAGTCTCCAACT 700958 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || ||||| || || || || || || | || || ||||| |||| || | | Sbjct 700959 CCAAAGACACACACAGAACGGACATGAACCCCATTACAGGGTGGATATGGGGCACCCTTG 701018 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 ||| |||||||| |||| |||||||| || || || | | ||| | ||| || ||| Sbjct 701019 GACACGTCCCCCTCAAAGTAATGCCACTTGACAAATCTGGCAAGAGCATTCATATCAGAG 701078 Query 162301 GTGTCGTACTTGTACACTGACGGCA-CGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 ||||| |||| |||| | | | | || || || || | || | || || | ||| Sbjct 701079 ACATCGTATTTGT-CACTAGCAGAAACAGCACCTGGCACTTCAGGGATTCGTTGAATAGT 701137 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 |||||||| || || || ||||| || || || || | |||||| || || || Sbjct 701138 AGCCCACAAGTACTCATCAGGACTGTAAGTGTCTTTAGCCCACTCTATAAAAGAAAGGAT 701197 Query 162420 CGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACC 162479 | | | | || | || ||| | ||| | |||| |||||| || || || Sbjct 701198 TTTGCTGTTTTCTAAGACATACTCGACAAACCTCCTACTTACAACAAAGTAGGCACTGCC 701257 Query 162480 AGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCAT 162539 ||| || | |||| | | ||||| ||| | | ||||||| ||| | || ||| | Sbjct 701258 AGAGAAAATGGGTGTACTGATAGGTGGGTGTTGTTTGTCTATTCCCATATTCTTTACTTT 701317 Query 162540 TCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA-GACGG---GT 162595 || || || | | | |||| |||||| ||| | || ||| || || | Sbjct 701318 ACCGTCAACAATTTCATAATGCTTCTTCCACC---GTATC-TCCTTGTATGAAGGCATTT 701373 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 ||||| || | ||||| |||| | || ||||| | | || || | | Sbjct 701374 TCTCGGTTTCCAAGCTGTTTTCACCCTTGAGAGCTTTCAGTTTCTCTGCTATTTCCTGGT 701433 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCA-CTT-AACGCT 162713 ||||||| | || || || | || || || || || | ||| ||||| ||| || | Sbjct 701434 TGGTCTTGATTGGGAAATCCATACCACAAAGGTTGATCAAATACTTCCAGCTTGTACTC- 701492 Query 162714 GAGTCC-GTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 ||| ||| || || | | ||||| || || || || || | |||||||| || | Sbjct 701493 --CTCCTGTAGAGGTCTTTCATGCAGTTGAGGTCTGCTTGCACTCTGCTCCACGAAGCAT 701550 Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832 |||| || ||||||| | | || | ||||||||||| ||||| ||| | |||||| Sbjct 701551 ACACTACACTCTCCAGCTGGCTCGCAATGAAGACATTGTCAAAACATGAAGCAATCCCCT 701610 Query 162833 TCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGT-ATAGAT 162889 |||| || |||| || || | ||| |||| || || | ||||| |||| | Sbjct 701611 TCACCGCAGCCAAGAAGGATTCTGG--GGACTTCTTATCCACATGAATGCAGTAATAG-T 701667 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 | || || || || | | ||||| | ||| || ||||| | || || || | |||| Sbjct 701668 TTTGGGGTGCATATACAGATCTCAGAAGTCTATCAAACATATTAATTTTGTGATAAACCA 701727 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACT 163009 | || || || || | || || || || || || || |||| | ||| || | Sbjct 701728 CTATTGAGTATGCAAGTGGAAATTCTGCTTCTTCTTTGCTCAGAGGTTCCATAATATATT 701787 Query 163010 TGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAA 163051 | || | | | | ||| | ||||| || |||||||||| Sbjct 701788 TCCGCTTCTTTATAAAAGAGGCACAATCAGTTGTCATGTTAA 701829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577047378400000